Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2537g00001 | ATGTCAGTAGAGAGTACAATGGAGGTGGATGATCCCAGTGACCCATTTCCCATTGGAATGCGGGTTCTTGCGGTGGACGATGATCCCACGTTCCTCTTTGTTCTGGAAACTCTGCTCCGGAAATGTCAATATCACGTGACCACAACTACTCAAGCAAAAGTTGCATTGAAGTTGTTGAGAGAAAACAAAAACAAGTTTGACTTGGTAATCAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTTGTTGGACTTGAGATGGACCTACCTGTCATAATGGTATCTATAAATGGTGATACGAAGCTGGTGATGAAAGGAATTTATCATGGAGCTTGCGATTATCTGTTGAAACCTGTGAGAATGGAGGAATTACAGAATATTTGGCAGCATGTATTTAGGAGGAAGATGTTTGATTCAAAGAAGAATAAAATCAACAACTCAGACAACAATCAAGAGAACGCTTCCTATCAAAATGGAATGCTTCCTAATAAAAGAAAGAATCATGACGAAGATGAAGTTGATAATGAAGAGAATCCTCACGATGATCAGGACCCATCTACCCAAAAGAAGCCTCGGGTTGTGTGGTCAGTAGAGCTACACCGAAAGTTTATGGCAGCTGTTAATCAGCTAGGAATTGACAAGGCTGTACCTAAGAAAATTCTCGATTTGATGAATAACGAAAGTCTTACAAGGGAAAATGTGGCAAGCCATCTCCAGAAGTATAGGCTTTATCTTAAACATCTTAGCCAGGCAAATCAACATGCTAATACGGTGGCAGCCTTAGGATTTAGGAGTGCTAATTCATCCTATTCAGGAATGAATTTTGTGAGTGGTAATGGACATTTGCAAACATCGAGTGGTTCTGAACAGTTTCATAACAATGCTTTCAGATCCTTTCCACCTGGTGGGATAACTAGTAGATTGAACAATCATGCTAGTCCTGGTGTGCATGGATTTCCTTCTCCTGGAGGAGTACTTCAGTCAGGTCAGTCACAAAATTTAAACAATTGCAGCAATGATCTACTCAAGTTTGAGACATCCATATTTCCTTTTAATTAA | 1071 | 0.4034 | MSVESTMEVDDPSDPFPIGMRVLAVDDDPTFLFVLETLLRKCQYHVTTTTQAKVALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMVSINGDTKLVMKGIYHGACDYLLKPVRMEELQNIWQHVFRRKMFDSKKNKINNSDNXNQENASYQNGMLPNKRKNHDEDEVDNEENPHDDQDPSTQKKPRVVWSVELHRKFMAAVNQLGIDKAVPKKILDLMNNESLTRENVASHLQKYRLYLKHLSQANQHANTVAALGFRSANSSYSGMNFVSGNGHLQTSSGSEQFHNNAFRSFPPGGITSRLNNHASPGVHGFPSPGGVLQSGQSQNLNNCSNDLLKFETSIFPFN | 357 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2537g00001 | 357 | SUPERFAMILY | CheY-like | 19 | 144 | IPR011006 | - | |
| Gabi2537g00001 | 357 | Pfam | Myb-like DNA-binding domain | 197 | 247 | IPR001005 | - | |
| Gabi2537g00001 | 357 | MobiDBLite | consensus disorder prediction | 147 | 167 | - | - | |
| Gabi2537g00001 | 357 | SMART | REC_2 | 20 | 132 | IPR001789 | GO:0000160 | |
| Gabi2537g00001 | 357 | PIRSF | RR_ARR_type-B | 1 | 354 | IPR017053 | GO:0003677|GO:0003700|GO:0009736 | |
| Gabi2537g00001 | 357 | ProSiteProfiles | Response regulatory domain profile. | 21 | 136 | IPR001789 | GO:0000160 | |
| Gabi2537g00001 | 357 | MobiDBLite | consensus disorder prediction | 307 | 337 | - | - | |
| Gabi2537g00001 | 357 | Gene3D | - | 191 | 254 | - | - | |
| Gabi2537g00001 | 357 | CDD | REC_typeB_ARR-like | 22 | 136 | - | - | |
| Gabi2537g00001 | 357 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 192 | 251 | IPR017930 | - | |
| Gabi2537g00001 | 357 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 20 | 283 | IPR045279 | GO:0009736 | |
| Gabi2537g00001 | 357 | Pfam | Response regulator receiver domain | 22 | 130 | IPR001789 | GO:0000160 | |
| Gabi2537g00001 | 357 | Gene3D | - | 19 | 158 | - | - | |
| Gabi2537g00001 | 357 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 195 | 248 | IPR006447 | GO:0003677 | |
| Gabi2537g00001 | 357 | SUPERFAMILY | Homeodomain-like | 192 | 252 | IPR009057 | - | |
| Gabi2537g00001 | 357 | MobiDBLite | consensus disorder prediction | 145 | 197 | - | - | |
| Gabi2537g00001 | 357 | FunFam | Two-component response regulator | 191 | 254 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2537g00001 | Gabi-Chr2537 | 9112 | 11614 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2537g00001 | 1 | 327 | Response Regulator Gene Family | AT2G25180 | 59.467 | 4.60e-115 | 344 |
Transcription factors information