Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2536g00018 ATGATGTTGCTTCAACTTCTTCATGTAATTTCTTGCTGTCTCTTTTTTTTTCTTCTTCTTCCATTCACTCTCTCTCTAAACTCTGACGGACTCTCTCTCCTGGCCTTAAAAGCCGCCATAGAAGTGGACCCCACAGGGGTGCTCAACTCGTGGTCTGACTCAGTTCAGAGTCCGTGTGAATGGTTCGGAGTGGTCTGCACCGGTGAACGAGTCACCCAACTCGCTCTCCCAGCAAAGGGGTTAAGTGGTTACATACCCTCAGAACTTGGTCACCTCACGGAGCTTAAGAAACTGAATCTTCAACACAACAACTTCTCCAGTGGCATTCCCTCAAGTTTGTTCAATGCAACAAACCTCATGGCCCTCGACCTCTCCAGTAACTCTCTCTGCGGTTCGCTACCCTCTACGATTGCATCTCTCAAAAATCTCATACACTTAGATTTGTCCTCTAATTTTCTCAATGGCTCTATCCCTGACTCGTTTTCGGAGCTCGTTAACCTCGTCGGAGCGTTGAACCTCTCACACAATCGATTCTCCGGCGGGGTTCCGGCGTCATTGGGGATGCTTCCGGTGGCCGTGAGTTTGGACCTCCGGGGGAATAACCTCACCGGAGAGATTCCTCAGGTTGGATCATTGCTCAACCAGGGTCCCACAGCGTTCGCCGGAAACCCTGGCCTCTGCGGGTTCCCGTTGCAGAACGCCTGCCCCGAAGAGAAGTCGCCGGAGATTTTCCCGAGCACGAGAGATGACCCGAACCTGAACCCGAATCCGAAACCGAAAGCGCTTTATCCTCGTGGAGCTTCAGAAGAGAAGGTGCGAGGTGGGTCTTTTGTTGTTGGTGGTGTAATCTCCGGCGTTTTGCTGATGTCTGTGGCGGTTTTGCTGTCGGTGTGGGTTTTCCGGCGACGGCGGAGGTGGGAGGCCGGCGAGGGTGAAATTGGAAAAAAGAAAGTGGAGGGTGAGGTTGGTGTTGGGGAGGAGCAGAAGGGTAGGTTTGTGGTGGTGGATGAAGGGTTTGGGTTGGAGTTGGAGGATTTGCTTAGGGGTTCTGCTTATGTGGTGGGGAAGAGCAGGAGTGGGATTGTGTACAAGGTTGTCGGAAAAGGGTCTTTCTCGACGGCGGCGGCGGCGGTGGCTGTTCGGCGGCTGAGTGAGGGTGATGTCACGTGGCGGTTCAAGGAGTTTGAATCTGAGGTGGCGGCTATTGGGAGGGTTCGCCACCCTAATGTTGTTCCGTTAAGAGCATATTACTATGCAAATGATGAGAAACTGCTCATCACTGATTTCATCCGCAATGGAAGCTTGTACACTGCATTGCATGGTGGGCCTTCCAATTCATTGCCACCATTATCCTGGGCAGCAAGGTTAAAAATTGCTCAAGGAACTGCAAGGGGCTTGATGTACATACATGAGTTCAATGGTAGAAAATATGTTCATGGCAACCTAAAACCAACAAAAATCCTACTAGATGATGATCTCCATCCTTGCATAACCGGTTTTGGACTTACTCGTCTTGGTTTGGGTACCTCAAAGTTTGCCCCATTAGTACCAAAACGGCAGAATTCAAACCAGTCTACCTTAACATCAGCAATGGGTTCAAAAGTTTCAGTTTCCTCTAACAACTACTTGGCACCTGAGGTGCGCATAGCTGGTGGAAAATTCACTCAGAAATGTGATGTGTATTCTTTTGGTATAGTGCTGTTAGAACTTTTGACAGGTCGGTTGCCAGATTTAGGGCCTGAAAATGATGGTAAGGAGCTAGAGAGTTTTGTGAGGAGAGCATTCAAGGAGGAGAAGCCCTTGTTGGAGATTTTAGACCCTGCGCTTTTACCCGAGGTTTATGCTAAAAAGCAAGTTATTGCTGCGTTTCATGTAGCACTGAATTGCACAGAACATGATCCAGAAATGCGACCTAGAATGAGAACCGTGTCTGAGAGCCTTGATTGCATCAATATACAATGA 1962 0.4924 MMLLQLLHVISCCLFFFLLLPFTLSLNSDGLSLLALKAAIEVDPTGVLNSWSDSVQSPCEWFGVVCTGERVTQLALPAKGLSGYIPSELGHLTELKKLNLQHNNFSSGIPSSLFNATNLMALDLSSNSLCGSLPSTIASLKNLIHLDLSSNFLNGSIPDSFSELVNLVGALNLSHNRFSGGVPASLGMLPVAVSLDLRGNNLTGEIPQVGSLLNQGPTAFAGNPGLCGFPLQNACPEEKSPEIFPSTRDDPNLNPNPKPKALYPRGASEEKVRGGSFVVGGVISGVLLMSVAVLLSVWVFRRRRRWEAGEGEIGKKKVEGEVGVGEEQKGRFVVVDEGFGLELEDLLRGSAYVVGKSRSGIVYKVVGKGSFSTAAAAVAVRRLSEGDVTWRFKEFESEVAAIGRVRHPNVVPLRAYYYANDEKLLITDFIRNGSLYTALHGGPSNSLPPLSWAARLKIAQGTARGLMYIHEFNGRKYVHGNLKPTKILLDDDLHPCITGFGLTRLGLGTSKFAPLVPKRQNSNQSTLTSAMGSKVSVSSNNYLAPEVRIAGGKFTQKCDVYSFGIVLLELLTGRLPDLGPENDGKELESFVRRAFKEEKPLLEILDPALLPEVYAKKQVIAAFHVALNCTEHDPEMRPRMRTVSESLDCINIQ 653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2536g00018 653 MobiDBLite consensus disorder prediction 238 259 - -
Gabi2536g00018 653 Pfam Protein tyrosine and serine/threonine kinase 354 647 IPR001245 GO:0004672|GO:0006468
Gabi2536g00018 653 SUPERFAMILY L domain-like 29 232 - -
Gabi2536g00018 653 Gene3D Transferase(Phosphotransferase) domain 1 430 653 - -
Gabi2536g00018 653 FunFam Leucine-rich repeat receptor-like protein kinase 144 237 - -
Gabi2536g00018 653 Pfam Leucine rich repeat 117 178 IPR001611 GO:0005515
Gabi2536g00018 653 ProSiteProfiles Protein kinase domain profile. 348 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2536g00018 653 FunFam Leucine-rich repeat receptor-like kinase 31 143 - -
Gabi2536g00018 653 SUPERFAMILY Protein kinase-like (PK-like) 354 647 IPR011009 -
Gabi2536g00018 653 Gene3D Ribonuclease Inhibitor 25 168 IPR032675 -
Gabi2536g00018 653 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Gabi2536g00018 653 Gene3D Ribonuclease Inhibitor 169 237 IPR032675 -
Gabi2536g00018 653 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 15 650 IPR046959 -
Gabi2536g00018 653 Gene3D Phosphorylase Kinase; domain 1 349 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2536g00018 Gabi-Chr2536 293840 297046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2536g00018 26 650 Receptor kinase-like Gene Family AT3G57830 59.655 0.0 705
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Gabi2536g00018 PK_Tyr_Ser-Thr 6.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2536g00018 - - gmx:100796011 848.58