Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2536g00017 ATGGATTCAAATATTCATCAAGGTTATCAACTCCAACAACAACAACAACAACAACAACAACAACATAACCAACCCAATTCTGGGTTGCTTCGTTTTCGTTCTGCACCAAGTTCACTTCTTGCAAATCTTACACCTTCTTCTGCTGCTGCTGTTGTCAACAAGGGCAACAACCTCTGGGAGGGTCTTGAATCAGAGAGATTGATTTCGAGATTTACGAGTTACGGTGGTTCTGATAGAAGCAACGATACTTCTGCTTCTTCTAGCTTCCAAGAAATCGAAGAGAAAAAGCCTTCTCCTAAGGTTTTGAGTCGTATGAATTCTCAGCAGCAGGGCTATGGTGGTGGTGGCTTGCCACCTCACTATCCAAGGCATGGTTCTTCTGCTACTTCGAGTTCTGCCTTGGATGGTTCATTTGGGTTGGTGGGTTCGTTGGGAATGGATCACGAAGCACCCAACAAGAACTTTGGTTCAAATCTTCTCAGGCAGAGTAGCTCCCCGGCTGGCCTTTTCTCCAACATTTCCTTTCAAAATGGGTTTGCCACCTTGAAAGGTGTTGGAAACTACGGTGCAGTGAATGGCAGTAATGGTGAACTTAGTCCGTCTATTAACAGATTGAAGAATCAGATTAGCTTCTCATCAAAAAGTGCTTCTTCTTTGGGAATGTTGTCACAGATTTCTGAAATAGGAAGTGAGGATATTGAAGCAACTAGTCCTGATGATGGGAGGCATGGAGGTAACAATGGTGATGCTCAACAGTATGGCTCTGGCTTCCCCTATGATTCTTGGAATGATACTCCACAACTCTCAGGAAATCTCAGTGGCTTAAAAAGAGGGCGAAGTGGTAATGAAAAGTTATTTTCTGATGTTCAGAATGGAGAGCAAGGAAATCAAGTTCATTTACTATCCCATCACTTGAGTTTACCAAAAACTTCAGAAGATATGATTGCTATGGAGAAGTTGCTTCAGTTTCCAGATTCTGTTCCTTGTAAAATTAGAGCAAAGCGAGGTTGTGCCACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACCCGGATCAGTGAGCGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGCAAACTAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGAATCTAAGTGAAAAACGAGCAAACTGCAAATGTATAACCATGCAGAAGGCAGATACAAATCAAATTGCTTAA 1248 0.4215 MDSNIHQGYQLQQQQQQQQQQHNQPNSGLLRFRSAPSSLLANLTPSSAAAVVNKGNNLWEGLESERLISRFTSYGGSDRSNDTSASSSFQEIEEKKPSPKVLSRMNSQQQGYGGGGLPPHYPRHGSSATSSSALDGSFGLVGSLGMDHEAPNKNFGSNLLRQSSSPAGLFSNISFQNGFATLKGVGNYGAVNGSNGELSPSINRLKNQISFSSKSASSLGMLSQISEIGSEDIEATSPDDGRHGGNNGDAQQYGSGFPYDSWNDTPQLSGNLSGLKRGRSGNEKLFSDVQNGEQGNQVHLLSHHLSLPKTSEDMIAMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKNLSEKRANCKCITMQKADTNQIA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2536g00017 415 Gene3D - 338 410 IPR036638 GO:0046983
Gabi2536g00017 415 SMART finulus 343 393 IPR011598 GO:0046983
Gabi2536g00017 415 MobiDBLite consensus disorder prediction 73 92 - -
Gabi2536g00017 415 Coils Coil 377 404 - -
Gabi2536g00017 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 402 IPR036638 GO:0046983
Gabi2536g00017 415 MobiDBLite consensus disorder prediction 233 254 - -
Gabi2536g00017 415 CDD bHLH_AtbHLH_like 342 395 IPR045239 -
Gabi2536g00017 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 387 IPR011598 GO:0046983
Gabi2536g00017 415 FunFam Transcription factor bHLH130 family 338 407 - -
Gabi2536g00017 415 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 409 - -
Gabi2536g00017 415 Pfam Helix-loop-helix DNA-binding domain 342 388 IPR011598 GO:0046983
Gabi2536g00017 415 MobiDBLite consensus disorder prediction 1 30 - -
Gabi2536g00017 415 MobiDBLite consensus disorder prediction 73 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2536g00017 Gabi-Chr2536 231806 235592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2536g00017 23 392 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.698 3.67e-96 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2536g00017 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2536g00017 - - gmx:100819605 549.28