Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2536g00014 ATGGGAAGAAGAAACGGTGGAAGGTCATTGCAAGACACCCTTCGTCGTCGATTGGATTCTTGCAAGTTAAAGTATTCTACCGTTGATGAACTCGTCACCCATCTTCGCTCAACTTACCCTGATTACCAGCGAACGAAGCACCAAACTTTAACTCGATTTGTTCAGGAAGCTCTTCAATCGAGCAAAAAGCCCAGTGATACTTCTAAACTGAAGCATGACGAAGATGATGACAATGAGGATCGAAGTGCGTCTCGAAAGAGAAGGAAGAAAATCGATGAAGACGAAGACAGATTGCAAAAGATGGAAGCATTACACATCAGAAGTAGGATGCGGATCAATCAGATTCATGGCCCTCCATCGACATCCTCTGCTTCAGCTTCGGAGAGCGAAGAAGATGAGGCTGTTTCTGTGTCGACGTCGGAGGAGGATGCAGTTTACGCGGAGAAGGTGGAACCTGCTTTTGATTTGATGAAAACGATGTTGCGGAATTCGTATGCTGGAACGAAGGTTGTGATGGAGGAAAAGAACGTTGAATTGGAGGTTCCTAATAGTAGTAGGGTCGCTACTCTTGTGAATGGGGGTGGAGGTGAGGCCAAGTCGACGAGGAAGCAATCGAGGGGGTCTGTTTCCGACGCACGCAGCGGCGGTAGGGGCAGTGATGTTGAGGTGAAGGGGAAAGATGGACCGAAGTTTAGTGATTTAGGTGGAATGAAGGAGGTTTTGAAGGAATTGAAGATGGAAGTGATTGTGCCATTGTTTCATCCACAATTGCCTAGAGAGTTAGGGGTGAGGCCAATAACTGGAATTTTATTGCATGGACCACCTGGCTGTGGAAAGACTAAACTGGCTCATGCTATAGCTAATGAGACTGGTCTTCCATTTTATCAGATTTCAGCTACTGAGGTGATTTCTGGAGTATCAGGTGCATCTGAAGAAAATATTAGAGAGCTTTTCTCTAAAGCACACAAGACTGCTCCATCAATTGTCTTCATTGATGAGATTGATGCAATTGGTTCAAAGAGAGAGAATTTACAGCGGGAGATGGAGAAACGAATTGTGACGCAGTTGATGACTTGCATGGATCAATCAAACAGGCTTCTGCAACCGGCTGATGGTTCTGAGAGTTCACATGATTGTCCTGGGTATGTTCTTGTAATTGGAGCTACGAATAGACCTGATGCTGTTGACCCTGCCTTGAGAAGGCCTGGTCGGTTTGATCGTGAGATTATGGTTGGTTTTCCTGATGAATCTGCAAGGGAGGAGATCCTTTCTGTGCTTACTCGCAATCTTAAACTTGATGGTTCATTTGATCTACGAAAAATAGCCAAGTCTACGCCTGGATTTGTTGGTGCTGATTTGGCAGCTCTGGCTAACAAGGCTGGTAATCTGGCGATGAAGAGAATAATTGACGAAAGGAAACATAAATTATCTCAAGATCTCACGAGTGAGCATGAGCATACTGAAGACTGGTGGAGGGAACCTTGGTTGTCTGAAGAAATGGATAAGCTTGCCATCAAAATGTCTGATTTTGAGGAAGCAGTCAAAATGGTGCAACCTTCATCAAAACGAGAAGGGTTCTCTTCCATTCCTAATGTAAAATGGGAAGATGTTGGTGGGCTTGATCTTTTAAGACAGGAGTTTGAACGCGAAATTATAGGGCGTATAAAACAGCCCATGAACTATGAGAGATTAGGGATAGATCATGAGACTGGATTTTTGCTCTATGGACCTCCAGGTTGTGGTAAAACACTGATTGCAAAAGCCGTTGCAAATGAGGCTGGAGCTAATTTCATTCATATTAAGGGACCTGAACTTTTAAATAAATATGTTGGAGAAAGTGAGCTTGCAGTTCGGACATTGTTTAGTCGTGCAAGGACTTGTGCTCCTTGTATAGTTTTTTTTGATGAGGTGGATGCTTTGACAACCAAGGGTAAAGAAGGTGGATGGGTTACTGAGCGACTATTGAAACAGTTGCTTACCGAGTTAGACGGTGCAGAGCCGCGGCAAGGTGTTTTTGTGATTGGTGCTACAAATAGGCCCGAGGCGATAGATGATTCTATCCTCCGACCTGGTAGGTTTGGTAGACGTCTTTATGTTCCTCTTCCAAGCCCGGAGGAGCGAGTTTTGATATTGAAAGCTCTTGCAAGGAAGAAGCCTGTTGATGCCAGTGTGGATCTCGGTGCAATAGGAAGGATGGAAGCCTGTGATAATTTAAGCGGAGCTGATCTTGCCGCATTGATGCACCAAGCAGCAATGGCCGCCCTTGAAGAGATATTGATCTCAACTAAGACAATTAGTGATGGAGATACTATCAAGACAAGTCATTTTGAGGTAGCACTGAGTAAAGTCTCTCCCTCTGTGTCAGACATGCAAAATAAGTACTACCAGCAATTGTCAATGAGGAAGGAGTGGAAGCGGTAA 2421 0.4457 MGRRNGGRSLQDTLRRRLDSCKLKYSTVDELVTHLRSTYPDYQRTKHQTLTRFVQEALQSSKKPSDTSKLKHDEDDDNEDRSASRKRRKKIDEDEDRLQKMEALHIRSRMRINQIHGPPSTSSASASESEEDEAVSVSTSEEDAVYAEKVEPAFDLMKTMLRNSYAGTKVVMEEKNVELEVPNSSRVATLVNGGGGEAKSTRKQSRGSVSDARSGGRGSDVEVKGKDGPKFSDLGGMKEVLKELKMEVIVPLFHPQLPRELGVRPITGILLHGPPGCGKTKLAHAIANETGLPFYQISATEVISGVSGASEENIRELFSKAHKTAPSIVFIDEIDAIGSKRENLQREMEKRIVTQLMTCMDQSNRLLQPADGSESSHDCPGYVLVIGATNRPDAVDPALRRPGRFDREIMVGFPDESAREEILSVLTRNLKLDGSFDLRKIAKSTPGFVGADLAALANKAGNLAMKRIIDERKHKLSQDLTSEHEHTEDWWREPWLSEEMDKLAIKMSDFEEAVKMVQPSSKREGFSSIPNVKWEDVGGLDLLRQEFEREIIGRIKQPMNYERLGIDHETGFLLYGPPGCGKTLIAKAVANEAGANFIHIKGPELLNKYVGESELAVRTLFSRARTCAPCIVFFDEVDALTTKGKEGGWVTERLLKQLLTELDGAEPRQGVFVIGATNRPEAIDDSILRPGRFGRRLYVPLPSPEERVLILKALARKKPVDASVDLGAIGRMEACDNLSGADLAALMHQAAMAALEEILISTKTISDGDTIKTSHFEVALSKVSPSVSDMQNKYYQQLSMRKEWKR 806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2536g00014 806 Gene3D - 414 524 - -
Gabi2536g00014 806 PANTHER AAA-FAMILY ATPASE 79 799 - -
Gabi2536g00014 806 MobiDBLite consensus disorder prediction 114 133 - -
Gabi2536g00014 806 MobiDBLite consensus disorder prediction 56 143 - -
Gabi2536g00014 806 SMART AAA_5 568 703 IPR003593 GO:0016887
Gabi2536g00014 806 SMART AAA_5 265 415 IPR003593 GO:0016887
Gabi2536g00014 806 MobiDBLite consensus disorder prediction 198 212 - -
Gabi2536g00014 806 ProSitePatterns AAA-protein family signature. 383 401 IPR003960 GO:0005524|GO:0016887
Gabi2536g00014 806 MobiDBLite consensus disorder prediction 188 230 - -
Gabi2536g00014 806 Gene3D - 221 412 IPR027417 -
Gabi2536g00014 806 Pfam AAA+ lid domain 723 777 IPR041569 -
Gabi2536g00014 806 Pfam AAA+ lid domain 436 471 IPR041569 -
Gabi2536g00014 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 230 523 IPR027417 -
Gabi2536g00014 806 ProSitePatterns AAA-protein family signature. 671 689 IPR003960 GO:0005524|GO:0016887
Gabi2536g00014 806 Gene3D - 702 781 - -
Gabi2536g00014 806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 530 796 IPR027417 -
Gabi2536g00014 806 Gene3D - 530 795 IPR027417 -
Gabi2536g00014 806 Pfam ATPase family associated with various cellular activities (AAA) 573 701 IPR003959 GO:0005524|GO:0016887
Gabi2536g00014 806 Pfam ATPase family associated with various cellular activities (AAA) 269 412 IPR003959 GO:0005524|GO:0016887
Gabi2536g00014 806 FunFam Cell division control protein 48 homolog C 414 524 - -
Gabi2536g00014 806 FunFam ATPase, AAA family protein 530 708 - -
Gabi2536g00014 806 FunFam Ribosome biogenesis ATPase RIX7 219 412 - -
Gabi2536g00014 806 MobiDBLite consensus disorder prediction 65 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2536g00014 Gabi-Chr2536 176657 181514 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2536g00014 228 786 Calmodulin-binding Proteins AT3G56690 36.039 1.25e-99 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2536g00014 K14571 - gmx:100809594 1122.46