Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2536g00003 ATGGATCCGGGTGCGATGATGAACGAGGGTTCCTTTGCGAATGGGAGTGGAAATACGGCGCCGTTTAGCTTGTCGGAGATCTGGCAGTTCCCGCCGGCGATGAATGGGTTGGGGCTGAGGAAGCCGGAGTTCGGACAAATCTTCGGGGGGCATTTTGGGGATTTCACCATCGGTCCGAACCGGGAAGTTTCGTGTAATGAACCGGTCGGGTCTAACCAGAGAGCAGCAGCAAACAATAGCCGGAAGAGGCGGGACTCGGAAGATGATTCGGCTAAGTGTGTTTCCACCAGCAATGGTGTTGCCAATGGCAATGTCAATGGGGTGAATGATGGTGATGGAAAACGGGTTAGAGCATCAGGGAATAAGAATGAAGGTGGTGATGGTAAAGTTGAAGGAGAAGCCAGTTCAGGAAAGCCTGCGGAGCAAAGCACTCAGCCACCTCATGAACCTCCTAAGCAAGATTACATTCATGTTCGAGCTAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAACGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAATTCTTCAGGATTTGGTCCCTGGTTGTAATAAGGTTATTGGAAAAGCATTGGTCCTTGATGAGATAATTAATTATATCCAATCTCTTCAGCGCCAAGTTGAGTTTTTGTCAATGAAGCTTGAAGCAGTGAATTCAAGACTTAACTCTGGCATTGAGGCGTTCCCTCCTAAAGATTTTGGTCAGCAGACATTTGATCCAGCTGGCATGCCATTCGGTTCACAATCTACAAGAGAGTATAGCAGGGGTTCTTCACCAGAGTGGTTACACATGCAGGTAGGAAGTGGTTTTGAAAGAACAACGTAG 858 0.4779 MDPGAMMNEGSFANGSGNTAPFSLSEIWQFPPAMNGLGLRKPEFGQIFGGHFGDFTIGPNREVSCNEPVGSNQRAAANNSRKRRDSEDDSAKCVSTSNGVANGNVNGVNDGDGKRVRASGNKNEGGDGKVEGEASSGKPAEQSTQPPHEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLNSGIEAFPPKDFGQQTFDPAGMPFGSQSTREYSRGSSPEWLHMQVGSGFERTT 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2536g00003 285 MobiDBLite consensus disorder prediction 63 153 - -
Gabi2536g00003 285 SMART finulus 170 220 IPR011598 GO:0046983
Gabi2536g00003 285 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 162 231 IPR036638 GO:0046983
Gabi2536g00003 285 CDD bHLH_AtBPE_like 154 239 - -
Gabi2536g00003 285 Gene3D - 161 237 IPR036638 GO:0046983
Gabi2536g00003 285 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 214 IPR011598 GO:0046983
Gabi2536g00003 285 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 71 260 IPR024097 GO:0006355
Gabi2536g00003 285 FunFam Basic helix-loop-helix transcription factor 161 233 - -
Gabi2536g00003 285 Coils Coil 211 231 - -
Gabi2536g00003 285 Pfam Helix-loop-helix DNA-binding domain 168 215 IPR011598 GO:0046983
Gabi2536g00003 285 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2536g00003 Gabi-Chr2536 28762 31158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2536g00003 1 243 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 55.645 5.43e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2536g00003 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2536g00003 - - gmx:100784478 406.757