Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2535g00030 ATGGCAGAACCAGAAAACGATCTTCAAACCTCGCCTGTGGATGAAAGCAAGAACAACAATAGTAAGAAGAAGAAGCGCGACAAAAAAAGACCTCGGAATATTGTTACCGAGGAGCGTTCAGAAGAAGAGGAAAATGAGAATAATATGGACGGAGAATCCGAGAAGAAGAAGAAGAAAAAGGAGAAGAAGGTGGAAGAAGAGAGAAAGGTGAAGAACAACGGTGGTTCTGGAATTATGAGTACCGAGTCTTTTGACTCTCTGGGATTGTCTGAACCTACTTATAAGGCAATTATGGATATGGGATTCCACAACATGACTCAGATTCAAGCGAGAGGAATTCCACCACTTTTGACTGGAAAAGATGTTCTTGGTGCTGCAAGGACTGGTTCTGGAAAAACTCTTGCCTTTTTAATTCCTGCTGTGGAGCTGTTGTACAATGTTAAATTTACATCACGTAATGGTGCTGGTGTTGTTGTCATATGCCCAACTAGAGAGCTTGCAATGCAGACTCATGCTGTTGCCAAGGAGCTTCTCAAGTATCATTCACAAACTCTTGGATTGGTTATTGGAGGTTCGGCTAGAAAAGTTGAAGCTGAACGCATCAAGAAAGGGATAAATCTATTGGTAGCTACTCCTGGTCGTCTTCTAGATCATCTTCAAAATACAAAGGGATTCATATATAAGAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAAATGAAGCAGATTATTAAGATCCTTCCAAAGAGTAGGCAAACAGCTTTATTTTCAGCTACGCAAACAAAGAAGGTTGAGGATCTTGCCCGCTTGTCATTTCAGACAACGCCTATCTATATTGATGTAGATGATGGGAGAACCAAGGTCACAAATGAAGGATTGCTGCAGGGTTATGTTGTTGTTCCCTGTGCCAAGCGATTTGTTGTTCTCTATTCCTTCCTGAAGAGACATCAGTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGACATTCTTAATCTCATTCATTTGGATTGCTCAAGTATTCATGGAAAACAAAAGCAGCAGACCCGGACAACTACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTTCTGTGGACTGGATTGTGCAGTATGATCCACCCGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTGCTTTTCTTGATTCCTGAAGAATTGCAATTTCTTCGTTATCTGAAGGCTGCTAAGGTCCCCGTGAAAGAGTATGCATATGATGAAAAGAAGGTGGTAAATGTACAGTCTCACCTGGAGAATTTGGTTGTCAACAATTTTTTTTTGAACAAGATGGCTAAAGAAGCTTATAGATCTTATATATTAGCATACAATTCACATTCCATGAAGGATATATTCAGTGTTCACCGCCTTGATTTGCAGGCAGTTGCTGCTTCATTCTGTTTTTCAAACCCACCGAATGTGAGTGTGAATATAAACAGCAGTAAGCAAAGGAAGAAAATGCAAATGCGTAAAGTTGATGGAAGTAGACATGGATTCAGCGAAAGCAATCCTTATGCAAAGGGTAATGCTGGCGATAAGCGACAGTTTGTGAGATATTAG 1710 0.4088 MAEPENDLQTSPVDESKNNNSKKKKRDKKRPRNIVTEERSEEEENENNMDGESEKKKKKKEKKVEEERKVKNNGGSGIMSTESFDSLGLSEPTYKAIMDMGFHNMTQIQARGIPPLLTGKDVLGAARTGSGKTLAFLIPAVELLYNVKFTSRNGAGVVVICPTRELAMQTHAVAKELLKYHSQTLGLVIGGSARKVEAERIKKGINLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKSRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRTKVTNEGLLQGYVVVPCAKRFVVLYSFLKRHQSKKVMVFFSSCNSVKFHADILNLIHLDCSSIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPSVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKVVNVQSHLENLVVNNFFLNKMAKEAYRSYILAYNSHSMKDIFSVHRLDLQAVAASFCFSNPPNVSVNINSSKQRKKMQMRKVDGSRHGFSESNPYAKGNAGDKRQFVRY 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2535g00030 569 Pfam Domain of unknown function (DUF4217) 464 524 IPR025313 -
Gabi2535g00030 569 CDD SF2_C_DEAD 303 433 - -
Gabi2535g00030 569 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 82 110 IPR014014 GO:0003724
Gabi2535g00030 569 SMART DUF4217_3 463 526 IPR025313 -
Gabi2535g00030 569 MobiDBLite consensus disorder prediction 49 72 - -
Gabi2535g00030 569 SMART helicmild6 342 423 IPR001650 -
Gabi2535g00030 569 FunFam RNA helicase 299 529 - -
Gabi2535g00030 569 Pfam Helicase conserved C-terminal domain 318 422 IPR001650 -
Gabi2535g00030 569 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 234 242 IPR000629 -
Gabi2535g00030 569 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 315 462 IPR001650 -
Gabi2535g00030 569 MobiDBLite consensus disorder prediction 1 85 - -
Gabi2535g00030 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 444 IPR027417 -
Gabi2535g00030 569 Coils Coil 42 69 - -
Gabi2535g00030 569 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 113 288 IPR014001 -
Gabi2535g00030 569 PANTHER RNA HELICASE 31 470 - -
Gabi2535g00030 569 Pfam DEAD/DEAH box helicase 106 277 IPR011545 GO:0003676|GO:0005524
Gabi2535g00030 569 SMART ultradead3 101 306 IPR014001 -
Gabi2535g00030 569 Gene3D - 304 549 IPR027417 -
Gabi2535g00030 569 CDD DEADc_DDX18 93 290 IPR044773 GO:0003724|GO:0005524
Gabi2535g00030 569 MobiDBLite consensus disorder prediction 531 561 - -
Gabi2535g00030 569 Gene3D - 13 292 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2535g00030 Gabi-Chr2535 253050 259772 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2535g00030 82 441 Eukaryotic Initiation Factors Gene Family AT3G13920 31.868 1.31e-49 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2535g00030 K13179 - gmx:100797375 942.184