Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2535g00027 ATGGAGCCCATGGACATCGTTGGCAAATCAAAGGAAGATGCTTCGCTTCCTAAAGCAACCATGACAAAAATTATTAAAGAGATGTTACCCCCAGATGTTCGTGTTGCAAGAGATGCTCAAGATCTATTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTCTCGTCAGAGTCCAATGAAGTCTGTAACAGAGAGGACAAACGGACGATTGCACCTGAGCATGTATTGAAGGCTCTAGAGGTTCTTGGATTTGGTGAGTACATTGAAGAAGTTTATGCAGCGTATGAACAGCACAAGAATGAGACCATGCACGACACTCTAAAAAGTGGTAAATGGAGCAATGGAGCTGAGATGACCGAGGAAGAAGCATTAGCAGAGCAACAAAGGATGTTTGCAGAGGCACGTGCGAGGATGAACGGCGGGGCCATTTCTTCCAAGCAGCCAGATGCTGACCAAAGTTTAGATAGCTAA 471 0.4437 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKNETMHDTLKSGKWSNGAEMTEEEALAEQQRMFAEARARMNGGAISSKQPDADQSLDS 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2535g00027 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Gabi2535g00027 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Gabi2535g00027 156 Gene3D Histone, subunit A 4 143 IPR009072 GO:0046982
Gabi2535g00027 156 FunFam Negative cofactor 2 beta 6 143 - -
Gabi2535g00027 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2535g00027 Gabi-Chr2535 229355 233556 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2535g00027 1 149 CCAAT-DR1 Transcription Factor Family AT5G23090 87.919 1.38e-95 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gabi2535g00027 CBFD_NFYB_HMF 3.9e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2535g00027 K21751 - gmx:100807912 293.123