Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2535g00022 ATGGAAAAAGTAGTCACATCAAAATTTCCAAACCAATCTCAAAACCAAAACAAGAATCTTTCTTTGGTGCCTCTTGAAATAGATAAGTCCTATGAGAAGAGAGAAGAGAGTATTATGAAGATTCCAAAAATAACAACCAAGAATGAGAAAAAATTTCTTGGGGTGAGACATAGGCCTTCAGGAAGATGGATTGCTGAGATCAAGGACTCATCACAGAAACTGAGGCTTTGGTTAGGAACTTTTGACAGAGCAGAAGATGCTGCCATGGCTTATGATTGTGCTGCAAGGCTTCTTAGAGGAAGAAATGCCAAAACAAACTTTCCAAACCCGGGAATCATGAACACTCATGAGGAAAGCTACACCATTTTGGGAAAGAATCCTAGGGCTTACAAGCTTCTTATGCATGCAGTCAAGAAGAACCATGCACTTTCCTCATCTGTTTATTCCACAGTCATGCCTTGGAAAAATCAGATCATGAGAGACGAATTTGACACTCTTGTTGAGGAAACAATAGTTTGCTCCATTCCTGAAGAAGGTTCTGGGTGTTGTGAAATTTCATTTGGAAGTTCTAAGGTTTATTCTTCTGTTGTTGTAGCTCCTTCTTTCAGTTCTTCTCATTGTCAAACAGGTGAAGATCATTAA 642 0.3894 MEKVVTSKFPNQSQNQNKNLSLVPLEIDKSYEKREESIMKIPKITTKNEKKFLGVRHRPSGRWIAEIKDSSQKLRLWLGTFDRAEDAAMAYDCAARLLRGRNAKTNFPNPGIMNTHEESYTILGKNPRAYKLLMHAVKKNHALSSSVYSTVMPWKNQIMRDEFDTLVEETIVCSIPEEGSGCCEISFGSSKVYSSVVVAPSFSSSHCQTGEDH 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2535g00022 213 Gene3D AP2/ERF domain 50 109 IPR036955 GO:0003700|GO:0006355
Gabi2535g00022 213 ProSiteProfiles AP2/ERF domain profile. 51 108 IPR001471 GO:0003700|GO:0006355
Gabi2535g00022 213 Pfam AP2 domain 51 100 IPR001471 GO:0003700|GO:0006355
Gabi2535g00022 213 SMART rav1_2 51 114 IPR001471 GO:0003700|GO:0006355
Gabi2535g00022 213 CDD AP2 50 109 IPR001471 GO:0003700|GO:0006355
Gabi2535g00022 213 FunFam ethylene-responsive transcription factor RAP2-11 50 109 - -
Gabi2535g00022 213 SUPERFAMILY DNA-binding domain 51 108 IPR016177 GO:0003677
Gabi2535g00022 213 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Gabi2535g00022 213 PRINTS Ethylene responsive element binding protein signature 74 90 IPR001471 GO:0003700|GO:0006355
Gabi2535g00022 213 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 33 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2535g00022 Gabi-Chr2535 169930 170928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2535g00022 42 109 AP2-EREBP Transcription Factor Family AT5G19790 63.014 2.30e-25 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi2535g00022 AP2 4.8e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2535g00022 - K09286 pvu:PHAVU_003G180000g 320.857