Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2531g00039 ATGGCTTCAAATGATGAACAAGGGTCCACCGTCATCGCCATCGATAGAGACCGGAACAGCCAATGCGCTGTCATTTGGGCCGTCGATCACCTTTTGAAGAAGAACTCCTCATGCACCCTCATTCACGTTAGAACCAAGGCCTTGTATCCCCATAATTTTGATGATGTCCCTAAACAAGGTCGTCCACCAACCGAAGAAGAATTGCACCAGCTTTTTCTTCCCTTCCGAGGATTTTGTGCTCGAAAGGGGATTATAGCAAAGGAGTTGGTCATGCATAGCATTGATGTTCCAAGCGTGCTTATTAATTACATCATTGACAACTCTATAAGCAATGTTGTTGTCGGTGCTTCCCGCTGGAATGTTCTTATAAGGAAATTTAGAGATTTCGATGTGCCAACAAGCTTAGTGAGGTCATTGCCAGAGTCTTGCATGGTGCATGTTATATCAAAAGGAGGAGTCCAGAATATTCGACCAGCAGGTCGTCCTCAAAATATTAGTATCACACCAACAAAATCTCTTAAAGACATTTCTGGTCCCAAGGGAAAATCTCTGCTTGAAGATTTAAACAGAAAATCATTAAAACATAGAATTTGGCAAGGCTCAAACAATGGTGGGGCATCTTTTGGTCAAAACAACGACGCTATACAGGTGGCACCACGTATGTCCAATGGAGAGACTACTTCACTAATAAGACCATCAGATGAAAACTGCTCCTCACAAAATTCATCAAATCGAAGTTCCATCAACGGTGATACTTCAAGGCCAATTGGTTCTCAATTGACTGAGACGTCACATGAAAACCAAGATATAGTAGAGAACTCAAATACTTCTAGGAACAAATCTTCTACAAATTCCTCAAAAAGCTTGGAGACAGAAATAAGGAAATTAAAACTAGAACCAAAGAGAACATCAAAGAAGAATAGTACGGCCTACAGGGAAGCTGTTGCAGCAAAACATAAGGCAATTGAGATTGAAAAGTTAAGGCAAGAAGAAAAGAACGTTGAAAAAGCAAGGCTTGCTGAAGAGGCTGCATTGCAGAAAACCAAAATATTGTCAAAACGCCTAGAAGAAATGAAGGCCCAGAAGAGAAAGAAGGAAGAAATAAGAGCCATGCATGAGGAAGAAGAGAGGAGGAGAGCATTGAATGCAAGTGCACATAACAATATTCAATTGAGAAGATACAATATTAAAGAAATTGAAGTTGCAACAAATTACTTTGACATTTCTCTCAAAATTGGTGAAGGTGGATATGGACCTGTTTTTAAAGGGGTGCTTGATGACACTGTTGTTGCCGTTAAGGCCTTGAAACCAGACATAACCCAAGGGGAGAGGCAATTTCAACAAGAGGTTAATGTTTTGAGTACCATAAGACATCCGAACATGGTTCCACTTCTAGGTGCATGTCCAGAGTACGGATGCCTTGTGTATGAGTACATGGAAAATGGAAGCTTAGAAGATCGCCTCTTCCTGAAAGATAATACTCCACCAATTCCATGGAAGACTAGATTCAAAATAGCATCAGAAATTGCCACTGGCCTTCTTTATCTTCACCAGACAAGACCAGAGCCAGTTGTGCATCGTGACCTCAAGCCAGCAAACATTCTCTTGGACAGGAACTATGTGAGCAAGATCACTGATGTGGGTTTGGCAAGGCTTGTTCCCCCTAAAGTACCAAACAAAACCACTCAATACCACAAGACAACTGCAGCTGGTACATTTTGCTATATTGACCCGGAGTATCAACAAACAGGATTATTGGGTGTAAAATCAGACATATATTCATTAGGCATAGTTCTGCTACAGATTATTACTGGAAAGCCTCCTATTGGTGTGGCCTACCTGGTTGATGAGGCTATCAACAATGGTAAATTCTCAGAGGTTCTTGATCCAAATGTAACAGATTGGCCTGTTGGAGAAACTTTATCTTATGCTAGGTTGTCTTTAAAGTGTTGTGAGATGAGAAAACGTGACAGACCAGACCTTGGTTCTATCATTTTGCCTGAGCTGAATCGACTCAGAAATCTGGGAGGAGCCACTGATTATGATATTTTACCTGCGAGACAGGAAGGAATGAGTAACAATCCTAATGTGGAAATGGAAAATTCAACGTAG 2112 0.411 MASNDEQGSTVIAIDRDRNSQCAVIWAVDHLLKKNSSCTLIHVRTKALYPHNFDDVPKQGRPPTEEELHQLFLPFRGFCARKGIIAKELVMHSIDVPSVLINYIIDNSISNVVVGASRWNVLIRKFRDFDVPTSLVRSLPESCMVHVISKGGVQNIRPAGRPQNISITPTKSLKDISGPKGKSLLEDLNRKSLKHRIWQGSNNGGASFGQNNDAIQVAPRMSNGETTSLIRPSDENCSSQNSSNRSSINGDTSRPIGSQLTETSHENQDIVENSNTSRNKSSTNSSKSLETEIRKLKLEPKRTSKKNSTAYREAVAAKHKAIEIEKLRQEEKNVEKARLAEEAALQKTKILSKRLEEMKAQKRKKEEIRAMHEEEERRRALNASAHNNIQLRRYNIKEIEVATNYFDISLKIGEGGYGPVFKGVLDDTVVAVKALKPDITQGERQFQQEVNVLSTIRHPNMVPLLGACPEYGCLVYEYMENGSLEDRLFLKDNTPPIPWKTRFKIASEIATGLLYLHQTRPEPVVHRDLKPANILLDRNYVSKITDVGLARLVPPKVPNKTTQYHKTTAAGTFCYIDPEYQQTGLLGVKSDIYSLGIVLLQIITGKPPIGVAYLVDEAINNGKFSEVLDPNVTDWPVGETLSYARLSLKCCEMRKRDRPDLGSIILPELNRLRNLGGATDYDILPARQEGMSNNPNVEMENST 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2531g00039 703 MobiDBLite consensus disorder prediction 290 311 - -
Gabi2531g00039 703 Coils Coil 279 299 - -
Gabi2531g00039 703 SMART serkin_6 406 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2531g00039 703 Gene3D HUPs 9 148 IPR014729 -
Gabi2531g00039 703 SUPERFAMILY Protein kinase-like (PK-like) 386 664 IPR011009 -
Gabi2531g00039 703 PANTHER OS02G0152300 PROTEIN 11 696 - -
Gabi2531g00039 703 CDD STK_N 9 151 - -
Gabi2531g00039 703 CDD STKc_IRAK 412 672 - -
Gabi2531g00039 703 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 126 - -
Gabi2531g00039 703 ProSitePatterns Serine/Threonine protein kinases active-site signature. 524 536 IPR008271 GO:0004672|GO:0006468
Gabi2531g00039 703 Pfam Protein kinase domain 410 660 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2531g00039 703 MobiDBLite consensus disorder prediction 225 311 - -
Gabi2531g00039 703 ProSiteProfiles Protein kinase domain profile. 406 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2531g00039 703 Coils Coil 317 378 - -
Gabi2531g00039 703 Gene3D Transferase(Phosphotransferase) domain 1 479 678 - -
Gabi2531g00039 703 FunFam Os07g0541700 protein 479 571 - -
Gabi2531g00039 703 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 379 478 - -
Gabi2531g00039 703 Gene3D Phosphorylase Kinase; domain 1 378 478 - -
Gabi2531g00039 703 MobiDBLite consensus disorder prediction 225 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2531g00039 Gabi-Chr2531 299082 303605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2531g00039 1 676 Receptor kinase-like Gene Family AT1G17540 44.444 0.0 606
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi2531g00039 Pkinase 2.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2531g00039 - - gmx:100814365 894.804