Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2531g00030 ATGGAGATGAGAGGTCGCTCCGTCGAAGATATTTTTCACGATTTCAAGGGCCGAAGAGCTGGCGTCATCAAAGCCCTCACCACTGATGTTGAAGATTTCTTCAGCCAATGTGATCCTGATAAGGAGAACTTGTGCTTATATGGATTGCCTGATGAGCGGTGGGAAGTAAATTTACCCGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTGCTGGGCCTTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTGGCCTTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGAGAGGAAACGACTATTCAATATGATTAATGAACTACCAACAATATTTGAAGTTGTTTCTGGCACATCAAAGAAACAAGTTAAAGAAAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCCGGCTCTAAAGTGCGGGCTCCTGAAACACAGGGTAGACAGTCAAAGGCATTACAATCAAAAGATGAGGACGAAGGACTGGAAGAGCTAGAGGATGCTGAACATGGAGAGGCCTTTTGTGGGGCATGTGGTGAGAATAATGATGGCGCTAATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCACGCTAA 750 0.4453 MEMRGRSVEDIFHDFKGRRAGVIKALTTDVEDFFSQCDPDKENLCLYGLPDERWEVNLPVEEVPPELPEPVLGLNFARDGMQEKDWLSLVAVHSDTWLLGLAFYFGARFGFDRAERKRLFNMINELPTIFEVVSGTSKKQVKEKSSVSNNSGSKSKSGSKVRAPETQGRQSKALQSKDEDEGLEELEDAEHGEAFCGACGENNDGANEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2531g00030 249 ProSitePatterns Zinc finger PHD-type signature. 196 243 IPR019786 -
Gabi2531g00030 249 SUPERFAMILY FYVE/PHD zinc finger 185 247 IPR011011 -
Gabi2531g00030 249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 245 IPR013083 -
Gabi2531g00030 249 ProSiteProfiles Zinc finger PHD-type profile. 193 246 IPR019787 -
Gabi2531g00030 249 PANTHER CPG BINDING PROTEIN 4 249 IPR045104 GO:0006355|GO:0042393
Gabi2531g00030 249 CDD PHD_AL_plant 195 246 IPR044104 -
Gabi2531g00030 249 SMART PHD_3 195 244 IPR001965 -
Gabi2531g00030 249 MobiDBLite consensus disorder prediction 141 171 - -
Gabi2531g00030 249 MobiDBLite consensus disorder prediction 141 183 - -
Gabi2531g00030 249 FunFam PHD finger alfin-like protein 188 245 - -
Gabi2531g00030 249 Pfam PHD-finger 195 246 IPR019787 -
Gabi2531g00030 249 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2531g00030 Gabi-Chr2531 240300 244664 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2531g00030 6 249 Alfin-like Transcription Factor Family AT3G42790 70.902 1.48e-117 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2531g00030 Alfin 2.6e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2531g00030 K26274 - gmx:100170696 385.956