Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2531g00029 ATGGAGATGAGAGGTCGCTCCGTCGAAGATATTTTTCACGATTTCAAGGGCCGAAGAGCTGGCGTCATCAAAGCCCTCACCACTGATGTTGAAGATTTCTTCAGCCAATGTGATCCTGATAAGGAGAACTTGTGCTTATATGGATTGCCTGATGAGCGGTGGGAAGTAAATTTACCCGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTGCTGGGCCTTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTGGCCTTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGAGAGGAAACGACTATTCAATATGATTAATGAACTACCAACAATATTTGAAGTTGTTTCTGGCACATCAAAGAAACAAGTTAAAGAAAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCCGGCTCTAAACGGGCTCCTGAAACACAGGGTAGACAGTCAAAGGCATTACAATCAAAAGATGAGGACGAAGGACTGGAAGAGCTAGAGGATGCTGAACATGGAGAGGCCTTTTGTGGGGCATGTGGTGAGAATAATGATGGCGCTAATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCACGCTAA 747 0.4444 MEMRGRSVEDIFHDFKGRRAGVIKALTTDVEDFFSQCDPDKENLCLYGLPDERWEVNLPVEEVPPELPEPVLGLNFARDGMQEKDWLSLVAVHSDTWLLGLAFYFGARFGFDRAERKRLFNMINELPTIFEVVSGTSKKQVKEKSSVSNNSGSKSKSGSKRAPETQGRQSKALQSKDEDEGLEELEDAEHGEAFCGACGENNDGANEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2531g00029 248 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
Gabi2531g00029 248 FunFam PHD finger alfin-like protein 187 244 - -
Gabi2531g00029 248 ProSitePatterns Zinc finger PHD-type signature. 195 242 IPR019786 -
Gabi2531g00029 248 Pfam PHD-finger 194 245 IPR019787 -
Gabi2531g00029 248 PANTHER CPG BINDING PROTEIN 4 248 IPR045104 GO:0006355|GO:0042393
Gabi2531g00029 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 244 IPR013083 -
Gabi2531g00029 248 MobiDBLite consensus disorder prediction 141 170 - -
Gabi2531g00029 248 ProSiteProfiles Zinc finger PHD-type profile. 192 245 IPR019787 -
Gabi2531g00029 248 SUPERFAMILY FYVE/PHD zinc finger 184 246 IPR011011 -
Gabi2531g00029 248 MobiDBLite consensus disorder prediction 141 182 - -
Gabi2531g00029 248 CDD PHD_AL_plant 194 245 IPR044104 -
Gabi2531g00029 248 SMART PHD_3 194 243 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2531g00029 Gabi-Chr2531 240300 244675 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2531g00029 6 248 Alfin-like Transcription Factor Family AT3G42790 69.959 1.16e-115 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2531g00029 Alfin 2.6e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2531g00029 K26274 - gmx:100777146 382.104