Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2531g00028 ATGGAGATGAGAGGTCGCTCCGTCGAAGATATTTTTCACGATTTCAAGGGCCGAAGAGCTGGCGTCATCAAAGCCCTCACCACTGATGTTGAAGATTTCTTCAGCCAATGTGATCCTGATAAGGAGAACTTGTGCTTATATGGATTGCCTGATGAGCGGTGGGAAGTAAATTTACCCGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTGCTGGGCCTTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTGGCCTTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGAGAGGAAACGACTATTCAATATGATTAATGAACTACCAACAATATTTGAAGTTGTTTCTGGCACATCAAAGAAACAAGTTAAAGAAAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCCGGCTCTAAAGGTAGACAGTCAAAGGCATTACAATCAAAAGATGAGGACGAAGGACTGGAAGAGCTAGAGGATGCTGAACATGGAGAGGCCTTTTGTGGGGCATGTGGTGAGAATAATGATGGCGCTAATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCACGCTAA 729 0.4403 MEMRGRSVEDIFHDFKGRRAGVIKALTTDVEDFFSQCDPDKENLCLYGLPDERWEVNLPVEEVPPELPEPVLGLNFARDGMQEKDWLSLVAVHSDTWLLGLAFYFGARFGFDRAERKRLFNMINELPTIFEVVSGTSKKQVKEKSSVSNNSGSKSKSGSKGRQSKALQSKDEDEGLEELEDAEHGEAFCGACGENNDGANEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2531g00028 242 Pfam PHD-finger 188 239 IPR019787 -
Gabi2531g00028 242 MobiDBLite consensus disorder prediction 141 164 - -
Gabi2531g00028 242 PANTHER CPG BINDING PROTEIN 4 242 IPR045104 GO:0006355|GO:0042393
Gabi2531g00028 242 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
Gabi2531g00028 242 MobiDBLite consensus disorder prediction 141 176 - -
Gabi2531g00028 242 FunFam PHD finger alfin-like protein 181 238 - -
Gabi2531g00028 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 179 238 IPR013083 -
Gabi2531g00028 242 ProSiteProfiles Zinc finger PHD-type profile. 186 239 IPR019787 -
Gabi2531g00028 242 CDD PHD_AL_plant 188 239 IPR044104 -
Gabi2531g00028 242 ProSitePatterns Zinc finger PHD-type signature. 189 236 IPR019786 -
Gabi2531g00028 242 SUPERFAMILY FYVE/PHD zinc finger 177 240 IPR011011 -
Gabi2531g00028 242 SMART PHD_3 188 237 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2531g00028 Gabi-Chr2531 240300 244677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2531g00028 6 242 Alfin-like Transcription Factor Family AT3G42790 70.248 5.73e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2531g00028 Alfin 2.4e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2531g00028 K26274 - cpap:110817645 362.459