Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2531g00027 ATGGAGATGAGAGGTCGCTCCGTCGAAGATATTTTTCACGATTTCAAGGGCCGAAGAGCTGGCGTCATCAAAGCCCTCACCACTGATGTTGAAGATTTCTTCAGCCAATGTGATCCTGATAAGGAGAACTTGTGCTTATATGGATTGCCTGATGAGCGGTGGGAAGTAAATTTACCCGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTGCTGGGCCTTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTGGCCTTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGAGAGGAAACGACTATTCAATATGATTAATGAACTACCAACAATATTTGAAGTTGTTTCTGGCACATCAAAGAAACAAGTTAAAGAAAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCCGGCTCTAAAGTGGGTAGACAGTCAAAGGCATTACAATCAAAAGATGAGGACGAAGGACTGGAAGAGCTAGAGGATGCTGAACATGGAGAGGCCTTTTGTGGGGCATGTGGTGAGAATAATGATGGCGCTAATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCACGCTAA 732 0.4413 MEMRGRSVEDIFHDFKGRRAGVIKALTTDVEDFFSQCDPDKENLCLYGLPDERWEVNLPVEEVPPELPEPVLGLNFARDGMQEKDWLSLVAVHSDTWLLGLAFYFGARFGFDRAERKRLFNMINELPTIFEVVSGTSKKQVKEKSSVSNNSGSKSKSGSKVGRQSKALQSKDEDEGLEELEDAEHGEAFCGACGENNDGANEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2531g00027 243 ProSitePatterns Zinc finger PHD-type signature. 190 237 IPR019786 -
Gabi2531g00027 243 SUPERFAMILY FYVE/PHD zinc finger 179 241 IPR011011 -
Gabi2531g00027 243 CDD PHD_AL_plant 189 240 IPR044104 -
Gabi2531g00027 243 PANTHER CPG BINDING PROTEIN 4 243 IPR045104 GO:0006355|GO:0042393
Gabi2531g00027 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 180 239 IPR013083 -
Gabi2531g00027 243 MobiDBLite consensus disorder prediction 141 165 - -
Gabi2531g00027 243 FunFam PHD finger alfin-like protein 182 239 - -
Gabi2531g00027 243 SMART PHD_3 189 238 IPR001965 -
Gabi2531g00027 243 Pfam Alfin 7 134 IPR021998 GO:0006355|GO:0042393
Gabi2531g00027 243 Pfam PHD-finger 189 240 IPR019787 -
Gabi2531g00027 243 MobiDBLite consensus disorder prediction 141 177 - -
Gabi2531g00027 243 ProSiteProfiles Zinc finger PHD-type profile. 187 240 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2531g00027 Gabi-Chr2531 240300 244677 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2531g00027 6 243 Alfin-like Transcription Factor Family AT3G42790 70.661 8.96e-116 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2531g00027 Alfin 2.5e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2531g00027 K26274 - gmx:100170696 362.459