Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2531g00026 ATGGAGATGAGAGGTCGCTCCGTCGAAGATATTTTTCACGATTTCAAGGGCCGAAGAGCTGGCGTCATCAAAGCCCTCACCACTGATAAGGAGAACTTGTGCTTATATGGATTGCCTGATGAGCGGTGGGAAGTAAATTTACCCGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTGCTGGGCCTTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTGGCCTTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAGAGCTGAGAGGAAACGACTATTCAATATGATTAATGAACTACCAACAATATTTGAAGTTGTTTCTGGCACATCAAAGAAACAAGTTAAAGAAAAGTCTTCAGTTTCAAACAACAGTGGCAGCAAATCTAAGTCCGGCTCTAAACGGGCTCCTGAAACACAGGGTAGACAGTCAAAGGCATTACAATCAAAAGATGAGGACGAAGGACTGGAAGAGCTAGAGGATGCTGAACATGGAGAGGCCTTTTGTGGGGCATGTGGTGAGAATAATGATGGCGCTAATGAGTTCTGGATTTGCTGTGACATCTGTGAGAAGTGGTTCCATGGCAAATGTGTGAAGATCACCCCTGCTAGGGCAGAGCATATCAAGCAATACAAGTGCCCATCATGCAGTAACAAGAGAGCACGCTAA 714 0.4468 MEMRGRSVEDIFHDFKGRRAGVIKALTTDKENLCLYGLPDERWEVNLPVEEVPPELPEPVLGLNFARDGMQEKDWLSLVAVHSDTWLLGLAFYFGARFGFDRAERKRLFNMINELPTIFEVVSGTSKKQVKEKSSVSNNSGSKSKSGSKRAPETQGRQSKALQSKDEDEGLEELEDAEHGEAFCGACGENNDGANEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2531g00026 237 ProSitePatterns Zinc finger PHD-type signature. 184 231 IPR019786 -
Gabi2531g00026 237 MobiDBLite consensus disorder prediction 130 171 - -
Gabi2531g00026 237 CDD PHD_AL_plant 183 234 IPR044104 -
Gabi2531g00026 237 FunFam PHD finger alfin-like protein 176 233 - -
Gabi2531g00026 237 Pfam PHD-finger 183 234 IPR019787 -
Gabi2531g00026 237 ProSiteProfiles Zinc finger PHD-type profile. 181 234 IPR019787 -
Gabi2531g00026 237 SMART PHD_3 183 232 IPR001965 -
Gabi2531g00026 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 233 IPR013083 -
Gabi2531g00026 237 PANTHER CPG BINDING PROTEIN 4 237 IPR045104 GO:0006355|GO:0042393
Gabi2531g00026 237 Pfam Alfin 7 123 IPR021998 GO:0006355|GO:0042393
Gabi2531g00026 237 MobiDBLite consensus disorder prediction 130 159 - -
Gabi2531g00026 237 SUPERFAMILY FYVE/PHD zinc finger 173 235 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2531g00026 Gabi-Chr2531 240300 244680 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2531g00026 6 237 Alfin-like Transcription Factor Family AT3G42790 67.490 1.24e-105 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Gabi2531g00026 Alfin 9e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2531g00026 K26274 - gmx:100170700 352.058