Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2531g00025 ATGAAGTGCTTATGTGAGAAAGACTCTAGTCTATGTTCTGCTCATTCAACATCCCCTTATGTTCTTGGATGCCAATCATGGGGCACATCTTCTGAATCTGAAGTCCAACAATCATCTATGTCCAAAAGTTTGAGCTTGAAAGTGGATGTTCTGCCACAACAATGCCACAAGAGCAAGGCACTGAGTTTTCAAATCCAAGAACAGGATTCATCTTCAACTCAATCAACTGGTCAAATTTCTGTCCAGCATAATTCTTCTACTGGTTCAACACTTAGCGGAACTGGGGGGAAGAGTATGGGATGTCTCATTAGGTCTTCTATGGGGAGTAGGGATTTTACCTTCTCTTCTCCACTACTGGATCACAGCCAATCACTTGCTCATATTGCATTCCACTATGCTGATCCATGCTATAGTGGCCTACTAGCTGCTGCATATGGCCCACAGTCTAAGATTCATCATTCCCAGCTAATGGGAACTGCTCCAGTTCGAATTCCTCTGCCCTTAGATCTTACAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTATCGAGCAAAACTCGAAGCACATAATAAACTCATCAAGGATCGGAAACCGTATCTTCATGAGTCCCGCCATCTACATGCATTAAAGAGAGCTAGAGGAGCCGGTGGTCGTTTTCTCAATACTAAAACTCTCCAAGAAGAAGAATCAAACCTTACTTCAGCAAACCATGGCCTAAATGTTTGCAGCATTACTCGTTTGAATCTGAGTGGAAACATGCCAGAATCCAAGGTAGAAAACTACAGAGATGGTGCTTCAATCTCAAGCTGTTCTGATATCACATTTGCATCTAATAGGGTTGAAATCTTCCAGCAACAACAGGAGTCAGACTTCAGGTTATGTGGTTTCCCTTCTCACACTGGAAGGGATATGCAAGATAAGGGTGGTGGTGCCAATCAACACGGTTTATCTGTTCTCATGTGA 990 0.4293 MKCLCEKDSSLCSAHSTSPYVLGCQSWGTSSESEVQQSSMSKSLSLKVDVLPQQCHKSKALSFQIQEQDSSSTQSTGQISVQHNSSTGSTLSGTGGKSMGCLIRSSMGSRDFTFSSPLLDHSQSLAHIAFHYADPCYSGLLAAAYGPQSKIHHSQLMGTAPVRIPLPLDLTEEPIYVNSKQYHAILRRRQYRAKLEAHNKLIKDRKPYLHESRHLHALKRARGAGGRFLNTKTLQEEESNLTSANHGLNVCSITRLNLSGNMPESKVENYRDGASISSCSDITFASNRVEIFQQQQESDFRLCGFPSHTGRDMQDKGGGANQHGLSVLM 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2531g00025 329 ProSiteProfiles NF-YA/HAP2 family profile. 171 231 IPR001289 GO:0003700|GO:0006355
Gabi2531g00025 329 SMART cbf3 170 231 IPR001289 GO:0003700|GO:0006355
Gabi2531g00025 329 MobiDBLite consensus disorder prediction 66 95 - -
Gabi2531g00025 329 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 173 228 IPR001289 GO:0003700|GO:0006355
Gabi2531g00025 329 ProSitePatterns NF-YA/HAP2 subunit signature. 176 196 IPR018362 GO:0003677|GO:0016602
Gabi2531g00025 329 Gene3D - 171 233 - -
Gabi2531g00025 329 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 296 IPR001289 GO:0003700|GO:0006355
Gabi2531g00025 329 PRINTS CCAAT-binding transcription factor subunit B signature 205 228 IPR001289 GO:0003700|GO:0006355
Gabi2531g00025 329 PRINTS CCAAT-binding transcription factor subunit B signature 174 196 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2531g00025 Gabi-Chr2531 234591 239070 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2531g00025 14 327 CCAAT-HAP2 Transcription Factor Family AT1G17590 41.471 7.59e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi2531g00025 CBFB_NFYA 7.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2531g00025 K08064 - gmx:100500765 395.586