Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2531g00024 ATGAAGTGCTTATGTGAGAAAGACTCTAGTCTATGTTCTGCTCATTCAACATCCCCTTATGTTCTTGGATGCCAATCATGGGGCACATCTTCTGAATCTGAAGTCCAACAATCATCTATGTCCAAAAGTTTGAGCTTGAAAGTGGATGTTCTGCCACAACAATGCCACAAGAGCAAGGCACTGAGTTTTCAAATCCAAGAACAGGATTCATCTTCAACTCAATCAACTGGTCAGTCTTTTCCTGAAGTTGGTCAAATTTCTGTCCAGCATAATTCTTCTACTGGTTCAACACTTAGCGGAACTGGGGGGAAGAGTATGGGATGTCTCATTAGGTCTTCTATGGGGAGTAGGGATTTTACCTTCTCTTCTCCACTACTGGATCACAGCCAATCACTTGCTCATATTGCATTCCACTATGCTGATCCATGCTATAGTGGCCTACTAGCTGCTGCATATGGCCCACAGTCTAAGATTCATCATTCCCAGCTAATGGGAACTGCTCCAGTTCGAATTCCTCTGCCCTTAGATCTTACAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTATCGAGCAAAACTCGAAGCACATAATAAACTCATCAAGGATCGGAAACCGTATCTTCATGAGTCCCGCCATCTACATGCATTAAAGAGAGCTAGAGGAGCCGGTGGTCGTTTTCTCAATACTAAAACTCTCCAAGAAGAAGAATCAAACCTTACTTCAGCAAACCATGGCCTAAATGTTTGCAGCATTACTCGTTTGAATCTGAGTGGAAACATGCCAGAATCCAAGGTAGAAAACTACAGAGATGGTGCTTCAATCTCAAGCTGTTCTGATATCACATTTGCATCTAATAGGGTTGAAATCTTCCAGCAACAACAGGAGTCAGACTTCAGGTTATGTGGTTTCCCTTCTCACACTGGAAGGGATATGCAAGATAAGGGTGGTGGTGCCAATCAACACGGTTTATCTGTTCTCATGTGA 1011 0.4293 MKCLCEKDSSLCSAHSTSPYVLGCQSWGTSSESEVQQSSMSKSLSLKVDVLPQQCHKSKALSFQIQEQDSSSTQSTGQSFPEVGQISVQHNSSTGSTLSGTGGKSMGCLIRSSMGSRDFTFSSPLLDHSQSLAHIAFHYADPCYSGLLAAAYGPQSKIHHSQLMGTAPVRIPLPLDLTEEPIYVNSKQYHAILRRRQYRAKLEAHNKLIKDRKPYLHESRHLHALKRARGAGGRFLNTKTLQEEESNLTSANHGLNVCSITRLNLSGNMPESKVENYRDGASISSCSDITFASNRVEIFQQQQESDFRLCGFPSHTGRDMQDKGGGANQHGLSVLM 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2531g00024 336 SMART cbf3 177 238 IPR001289 GO:0003700|GO:0006355
Gabi2531g00024 336 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 303 IPR001289 GO:0003700|GO:0006355
Gabi2531g00024 336 Gene3D - 178 240 - -
Gabi2531g00024 336 PRINTS CCAAT-binding transcription factor subunit B signature 212 235 IPR001289 GO:0003700|GO:0006355
Gabi2531g00024 336 PRINTS CCAAT-binding transcription factor subunit B signature 181 203 IPR001289 GO:0003700|GO:0006355
Gabi2531g00024 336 ProSitePatterns NF-YA/HAP2 subunit signature. 183 203 IPR018362 GO:0003677|GO:0016602
Gabi2531g00024 336 ProSiteProfiles NF-YA/HAP2 family profile. 178 238 IPR001289 GO:0003700|GO:0006355
Gabi2531g00024 336 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 180 235 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2531g00024 Gabi-Chr2531 234591 239074 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2531g00024 14 334 CCAAT-HAP2 Transcription Factor Family AT1G17590 42.229 2.89e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi2531g00024 CBFB_NFYA 7.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2531g00024 K08064 - gmx:100500765 404.831