Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2531g00023 ATGAAGTGCTTATGTGAGAAAGACTCTAGTCTATGTTCTGCTCATTCAACATCCCCTTATGTTCTTGGATGCCAATCATGGGGCACATCTTCTGAATCTGAAGTCCAACAATCATCTATGTCCAAAAGTTTGAGCTTGAAAGTGGATGTTCTGCCACAACAATGCCACAAGAGCAAGGCACTGAGTTTTCAAATCCAAGAACAGGATTCATCTTCAACTCAATCAACTGGTCAAATTTCTGTCCAGCATAATTCTTCTACTGGTTCAACACTTAGCGGAACTGGGGGGAAGAGTATGGGATGTCTCATTAGGTCTTCTATGGGGAGTAGGGATTTTACCTTCTCTTCTCCACTACTGGATCACAGCCAATCACTTGCTCATATTGCATTCCACTATGCTGATCCATGCTATAGTGGCCTACTAGCTGCTGCATATGGCCCACAGTCTAAGCTAATGGGAACTGCTCCAGTTCGAATTCCTCTGCCCTTAGATCTTACAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGGCGTAGACAGTATCGAGCAAAACTCGAAGCACATAATAAACTCATCAAGGATCGGAAACCGTATCTTCATGAGTCCCGCCATCTACATGCATTAAAGAGAGCTAGAGGAGCCGGTGGTCGTTTTCTCAATACTAAAACTCTCCAAGAAGAAGAATCAAACCTTACTTCAGCAAACCATGGCCTAAATGTTTGCAGCATTACTCGTTTGAATCTGAGTGGAAACATGCCAGAATCCAAGGTAGAAAACTACAGAGATGGTGCTTCAATCTCAAGCTGTTCTGATATCACATTTGCATCTAATAGGGTTGAAATCTTCCAGCAACAACAGGAGTCAGACTTCAGGTTATGTGGTTTCCCTTCTCACACTGGAAGGGATATGCAAGATAAGGGTGGTGGTGCCAATCAACACGGTTTATCTGTTCTCATGTGA 975 0.4297 MKCLCEKDSSLCSAHSTSPYVLGCQSWGTSSESEVQQSSMSKSLSLKVDVLPQQCHKSKALSFQIQEQDSSSTQSTGQISVQHNSSTGSTLSGTGGKSMGCLIRSSMGSRDFTFSSPLLDHSQSLAHIAFHYADPCYSGLLAAAYGPQSKLMGTAPVRIPLPLDLTEEPIYVNSKQYHAILRRRQYRAKLEAHNKLIKDRKPYLHESRHLHALKRARGAGGRFLNTKTLQEEESNLTSANHGLNVCSITRLNLSGNMPESKVENYRDGASISSCSDITFASNRVEIFQQQQESDFRLCGFPSHTGRDMQDKGGGANQHGLSVLM 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2531g00023 324 ProSiteProfiles NF-YA/HAP2 family profile. 166 226 IPR001289 GO:0003700|GO:0006355
Gabi2531g00023 324 Gene3D - 166 228 - -
Gabi2531g00023 324 MobiDBLite consensus disorder prediction 66 95 - -
Gabi2531g00023 324 SMART cbf3 165 226 IPR001289 GO:0003700|GO:0006355
Gabi2531g00023 324 PRINTS CCAAT-binding transcription factor subunit B signature 169 191 IPR001289 GO:0003700|GO:0006355
Gabi2531g00023 324 PRINTS CCAAT-binding transcription factor subunit B signature 200 223 IPR001289 GO:0003700|GO:0006355
Gabi2531g00023 324 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 31 291 IPR001289 GO:0003700|GO:0006355
Gabi2531g00023 324 ProSitePatterns NF-YA/HAP2 subunit signature. 171 191 IPR018362 GO:0003677|GO:0016602
Gabi2531g00023 324 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 168 223 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2531g00023 Gabi-Chr2531 234591 239075 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2531g00023 14 322 CCAAT-HAP2 Transcription Factor Family AT1G17590 41.493 3.23e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gabi2531g00023 CBFB_NFYA 7.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2531g00023 K08064 - gmx:100500765 379.793