Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2531g00013 ATGGAATACCCTTTTCCCCCTAAGGGAAGAGGAATTGAGCTTTGGGAATCACCTAGAGCTCAGTTGGAAGGATCAACATCATTAGATGGTAGAATGAGCAATTCAATGTCAGAGGATTTGCCTAACAGCTTCTCCGAGCTCATGAACTTTGATACTTATGCTGGTTTGTGCAATAGCCCATCCATGACTGATCAACTTTTGGCTAATGGGCTTCCATCATTTGCCTCACTACCATATCCATCGCCTGGTGAATTCAATCCGGTGGAACAAAACAGTGAGCAATTCTTTATGAATGGAGTTGGTGGAAATTACAATGATAGGGAAAGCTCCCCCACGTATGGAGAGAAGTTAGTGTTTCAGCAAATGGACACCCTACTTGGTTTCTTAGATGACACAAATGATGCAAATAACTTAAATTATAAGCAAAAAATTCATGGCCCTTCTCAACATCTTAATACCTTTGATATGGGCAATCACATAATTTCTAGGCCACCTGGTTTGTCACTTGATGAGAGAATGCTTAAGGCTTTGTCTTTCTTTAAGGAATCAGCTGGTGGTGGAATATTGGCACAAGTTTGGGTTCCCATACAACATGGTGATCAATTTGTCTTAAGCACGAGCGAGCAACCTTATTTGCTAGACCAATTGCTTGCAGGGTATCGTGAAGTGTCAAGGACATTTACATTTTCTGCAGGAGGAAATTCACGTAGTTTCCCAGGACTTCCTGGTCGTGTGTTTATCTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTATTACAGTAAGAGTGAGTACTTGAGGGTTGAGCATGCAATTCATCATGAGGTTCGTGGATCAATTGCTTTTCCCATATTCGATCTGCACTCTGAAGTGCCATGCTGTGCTGTACTGGAACTAGTCACTAAAAAGGAAAAGCCTGATTTTGACAGAGAATTGGAAGTTGTTTGCCGTGCACTCCAGCTTGTAAATTTAAGGACTACTTTGCCTCTTCGATTGCTTCCCGAGTGTCTTTCAAATAACAAAAGAGCTGCTTTAACAGAGATAGTTGATGTGTTACGATCTGTATGTCATGCACATAGATTGCCCCTGGCACTGACATGGATTCCCTGTTATTACACTGAGGACACAGGAGGTGGAGCAACAAATATTCGAATTAAAGAGGGTCAATCAAGTTCTGGTGAAAAAAGCATATTGTGCATCGAGGAATCAGCTTGCTATATAACTGATAGAGCGATGGAAGGATTTGTTCATGCATGCATTGAACATCAACTTGAGGAAGGGAAAGGTTTAGCCGGGAAAGCTCTTCAATCCAATCATCCTTTCTTCTTTCCTGATGTGAAGGCGTATGATATTTGTGAATATCCACTTGTCCATCATGCACGCAAGTATAATTTGAATGCTGCGGTTGCAATTAAGCTAAGGAGCACCTACACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTGTCAGTATGAGAGGGAGTTCAGAGCAACAACTTTTATTGGACAACCTCTCAAGTACCATGCAGAGAATTTGTAGGAGTTTGAGGACAGTTTCAGAAACTGAAGTACCTGGAATAGAATGCTCACAAGCGGGGTTTGAAAAGGAAAATGTTAACCATGATTCTATCCGGAAGACGCCATTGAAGGCATCGAACCTGAGAAACAATGGAATTGAGCCTTCTCGTACCCAGGAAAGAAATGGATCAAGAAGACAGGTGAAAAAGAGAAGCACATCAGAGAGGAATGTTAGCTTGAGTGTTCTCCAACAGTACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCAACAACTCTGAAAAGGATATGCAGGCAACATGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCATTCATTGAAGAAAATTCAGACTGTGCTTGACTCTGTCCATGGAGTGGAAGGAGGGTTGAAGTTTGATCCTCGAATGGCGGCGTTCGTGGCAGGAGGTTCAATCATCCAAGAAACTGATGCACATAAAAGTCTTCTCTTCCCTGAAAAGTGTACTATAAAAGACCAAGGGCCTGTTACACAAGATGCAGTCTCAGTACTGCCTGCACCTTGTAGTGACAGTGAGAATTCGACTATTAAGTTGGAGGGAAAATTGAAGAAAACCAATGCCTCTTCAGTTGATTGTAGTGAAGATTCAAAATCAGTGGCAATGGATTGTCCTGAACAAGCTTCTTTGGGTTCTGTTCTTGCAAAAGAAGGTGATAAATGGGTTCTGAACAAGGGTGGTTTGAGTTTAGAAAAATCTAAACGCTTGATGGCTTATGAGATGGACATTGGTGTTGATGGGGATGATGGGGTTGTTGAACTTGAACATCACCACCATACTTCTTCAAGCTTGACAAACTCATCTAATGGCTCTGGTTCAATGATGCATGACTATTATTCGTCAAGTTCTCAGAGCTTTGAGAACCAGAAGCATTCTAAAGTCATATCAACCATTGTGGATAGTGATTCAAAAATTATTGTCAAAGCTACCTATAGAGAAGACACCATTCGTTTCAAGTTTGATCCGTCCGCAGGTTGTTTCAAGCTATATGAAGAAGTTGCAGCAAGATTCAAATTACAAAATGGGTCATTCCAGCTCAAATATCTAGATGATGAAGAAGAGTGGGTGATGTTGGTGAATGATGCGGATTTGCAAGAGTGTATAGATATATTGGATGATATTGGAAAACGTATTGTGAGGTTTCTTGTTCGTGATATGCCTTCCATTGCTCTGGCAACTCATAGCACATCAGATGATGGATGA 2808 0.4124 MEYPFPPKGRGIELWESPRAQLEGSTSLDGRMSNSMSEDLPNSFSELMNFDTYAGLCNSPSMTDQLLANGLPSFASLPYPSPGEFNPVEQNSEQFFMNGVGGNYNDRESSPTYGEKLVFQQMDTLLGFLDDTNDANNLNYKQKIHGPSQHLNTFDMGNHIISRPPGLSLDERMLKALSFFKESAGGGILAQVWVPIQHGDQFVLSTSEQPYLLDQLLAGYREVSRTFTFSAGGNSRSFPGLPGRVFISKVPEWTSNVGYYSKSEYLRVEHAIHHEVRGSIAFPIFDLHSEVPCCAVLELVTKKEKPDFDRELEVVCRALQLVNLRTTLPLRLLPECLSNNKRAALTEIVDVLRSVCHAHRLPLALTWIPCYYTEDTGGGATNIRIKEGQSSSGEKSILCIEESACYITDRAMEGFVHACIEHQLEEGKGLAGKALQSNHPFFFPDVKAYDICEYPLVHHARKYNLNAAVAIKLRSTYTNDDDYILEFFLPVSMRGSSEQQLLLDNLSSTMQRICRSLRTVSETEVPGIECSQAGFEKENVNHDSIRKTPLKASNLRNNGIEPSRTQERNGSRRQVKKRSTSERNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKVNHSLKKIQTVLDSVHGVEGGLKFDPRMAAFVAGGSIIQETDAHKSLLFPEKCTIKDQGPVTQDAVSVLPAPCSDSENSTIKLEGKLKKTNASSVDCSEDSKSVAMDCPEQASLGSVLAKEGDKWVLNKGGLSLEKSKRLMAYEMDIGVDGDDGVVELEHHHHTSSSLTNSSNGSGSMMHDYYSSSSQSFENQKHSKVISTIVDSDSKIIVKATYREDTIRFKFDPSAGCFKLYEEVAARFKLQNGSFQLKYLDDEEEWVMLVNDADLQECIDILDDIGKRIVRFLVRDMPSIALATHSTSDDG 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2531g00013 935 Gene3D - 835 918 - -
Gabi2531g00013 935 MobiDBLite consensus disorder prediction 546 565 - -
Gabi2531g00013 935 MobiDBLite consensus disorder prediction 566 580 - -
Gabi2531g00013 935 ProSiteProfiles PB1 domain profile. 839 921 IPR000270 GO:0005515
Gabi2531g00013 935 SMART PB1_new 839 921 IPR000270 GO:0005515
Gabi2531g00013 935 CDD PB1_NLP 840 920 IPR034891 -
Gabi2531g00013 935 ProSiteProfiles RWP-RK domain profile. 567 652 IPR003035 -
Gabi2531g00013 935 Pfam RWP-RK domain 584 632 IPR003035 -
Gabi2531g00013 935 Pfam PB1 domain 842 920 IPR000270 GO:0005515
Gabi2531g00013 935 MobiDBLite consensus disorder prediction 540 583 - -
Gabi2531g00013 935 SUPERFAMILY CAD & PB1 domains 834 923 - -
Gabi2531g00013 935 PANTHER PROTEIN NLP8 143 925 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2531g00013 Gabi-Chr2531 153094 158410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2531g00013 1 921 NLP Transcription Factor Family AT2G43500 49.895 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gabi2531g00013 PB1 1.4e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2531g00013 - - gmx:100804426 1360.13