Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2528g00002 ATGGGAAGACCACCTTGCTGTGACAAAATTGGCATTAAAAAAGGGCCTTGGACTCCAGAAGAGGACATCATCTTGGTCTCTTACATTCAAGAACATGGACCTGGGAATTGGAGATCAGTTCCTACTAATACAGGTTTGATGAGATGCAGTAAAAGCTGCAGACTCAGATGGACTAACTATCTTCGACCTGGTATCAAACGAGGTAATTTCACTGATCATGAAGAGAAAATGATAATCCACCTCCAAGCGCTTTTGGGTAACAGATGGGCTGCCATAGCTTCCTATCTTCCACAAAGGACAGACAATGACATAAAAAACTATTGGAATACCCATCTCAAGAAAAAGCTGAAGAAGATGCAAAATGGGAATGAGGATGATCATGACAAAGGAGGAAACTCTTTTTCACAGTCAAAAGGTCAATGGGAGAGAAGGCTCCAAACAGATATCCACATGGCCAAACAAGCCTTATGTGAGGCACTTTCCCTTGACAAGCCAAGTCATATTTTACCTGAGATAACCAATAATTACCCTGCAACCAAGGCTACAACAACACCAAACCAAACATCATCTCTATACGCCTCAAGCACTGAAAACATAGCCCGATTGCTCGAAAACTGGATGAAGAAATCCCCAAACTCTGGTGAAACAAATTCAGGAAATTCCTTTAGCAACAACATGGTAACCACAGGGTCAAGTTCTAGTGAAGGAGCACAGAGCACTCTCACTTGCACACAACAAGATCATCATGCTCTTGACTCTTTGTTGAGCTTCAAGTCCTTCAACTCTGGTTATTCTCAATCTGTGTCGTTTGAAGAAAACAACACCAACTTGACAAGTGCCGATGCTGGCAACTTCCAAGATGAAAGCAAGCCAAGCATGGACACGCAAGCTCCTCTCATGTTTCTGGAAAAGTGGCTTTTTGATGATGGGGCCAATCAATGTCATGAAGATTTATTGAACATGTCACTGGAGGAAAGTACATCAGTGTTATTTTAG 996 0.4217 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKKMQNGNEDDHDKGGNSFSQSKGQWERRLQTDIHMAKQALCEALSLDKPSHILPEITNNYPATKATTTPNQTSSLYASSTENIARLLENWMKKSPNSGETNSGNSFSNNMVTTGSSSSEGAQSTLTCTQQDHHALDSLLSFKSFNSGYSQSVSFEENNTNLTSADAGNFQDESKPSMDTQAPLMFLEKWLFDDGANQCHEDLLNMSLEESTSVLF 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2528g00002 331 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gabi2528g00002 331 MobiDBLite consensus disorder prediction 118 132 - -
Gabi2528g00002 331 CDD SANT 69 112 IPR001005 -
Gabi2528g00002 331 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gabi2528g00002 331 CDD SANT 16 61 IPR001005 -
Gabi2528g00002 331 Gene3D - 13 66 - -
Gabi2528g00002 331 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi2528g00002 331 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gabi2528g00002 331 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gabi2528g00002 331 MobiDBLite consensus disorder prediction 118 142 - -
Gabi2528g00002 331 FunFam MYB-related transcription factor 13 66 - -
Gabi2528g00002 331 FunFam Transcription factor MYB30 68 126 - -
Gabi2528g00002 331 Gene3D - 68 139 - -
Gabi2528g00002 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Gabi2528g00002 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 239 - -
Gabi2528g00002 331 MobiDBLite consensus disorder prediction 209 241 - -
Gabi2528g00002 331 SMART sant 13 63 IPR001005 -
Gabi2528g00002 331 SMART sant 66 114 IPR001005 -
Gabi2528g00002 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2528g00002 Gabi-Chr2528 123380 125287 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2528g00002 1 323 MYB Transcription Factor Family AT5G62470 52.830 1.18e-112 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2528g00002 Myb_DNA-binding 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2528g00002 K09422 - gmx:100794319 481.87