Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2528g00001 ATGAAAAAGAGACAGGTGGTGGTGAAAAGAGATGTCTCCAACACCTCATCTTCTGTAATCAGAAATATTCGATATGGCGAGTGCCAGAAGAATCATGCAGCAAATATTGGAGGGTATGCTGTGGATGGTTGCAGAGAATTCATGGCTAGTACAGGGGAGGGATCTAGTGGTGCTCTTACATGTGCAGCTTGTGGCTGCCACAGGAACTTTCACAGAAGGGAAGTGCAAACTGAGGTAGTATGTGAGTACTCTCCTCCTAATTCTGGTCGTTGA 273 0.4579 MKKRQVVVKRDVSNTSSSVIRNIRYGECQKNHAANIGGYAVDGCREFMASTGEGSSGALTCAACGCHRNFHRREVQTEVVCEYSPPNSGR 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2528g00001 90 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 25 74 IPR006456 -
Gabi2528g00001 90 Pfam ZF-HD protein dimerisation region 23 75 IPR006456 -
Gabi2528g00001 90 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 24 75 IPR006456 -
Gabi2528g00001 90 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 4 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2528g00001 Gabi-Chr2528 21033 21580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2528g00001 1 88 Zinc finger-homeobox gene family AT1G18835 77.528 3.56e-42 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gabi2528g00001 ZF-HD_dimer 9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2528g00001 - - gmx:100785967 174.866