Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2527g00016 ATGACCAAGTCTAATTCTTCTAGTGAAAAGAATGGATTAAAGAAAGGTCCATGGACTCCAGAGGAAGATCAGAAACTCGTGGATTATATTCAGAAACATGGTCACGGGAAGTGGCGAACCCTTCCCAAGAATGCAGGACTAAAAAGATGTGGAAAGAGTTGTCGTCTTCGCTGGGCTAACTACTTGAGGCCTGATATAAAGAGAGGAAGATTCTCATTCCAAGAAGAAGAAACCATCATCCAGTTACATAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATAAAGAATTATTGGAATACCCACATCAAGAAAAAGCTAATGAAGATGGGGATTGATCCAGTGACACACACACCACGCCTTGATGTTCTACAACTTGTTTCCATTCTGAACTCATCTTTATACAATTCACCCCAATTTAACAACCACCATGGTCTTTATGGGATGGGAAATGTGATAAATCCAAGCCAGCTCTTAAATTTGCTCACCACTCTGTTATCATGTCAAAGCAGAAACCCAAATGTTTTGAATCATAGTTTTCAGCAAAACCAAGTTGGTAATAGCCCTCTATTCCAAAACCAATCCCAATTTTCCCAACCAATGCAACAACTTAACTCTACACAAACACAAGCCTTCCAACCAAACCAACCCCAAGTAGTTCAAGAAAACCACTGTTCTACATCTAATCCATTGCATATGGAACCCCAACTCATGAAAACAACGTTAGAGAATCAAATCTCTCAAATTGCTTCTCCTTTTAGAAACCAAAACACTCTACCAAATTTGTGGCAGGACACTGAAGGTGCCGAATCATCAGCTATACCATGTTTCTCTTCCCCCAAGTTCAACTCCATGATCAACAATATCATGGAAAATCAAATTTTATGTAACAATGAGGGAATCCCAGATTTCAATTTAAGCTCGTTGTTATCTTCCACACCTTCTTCATCTTCTAGCCCAAGTACCTTGAAATCATCATCTTCCACAACATTTGTCAATGGAACCACTACTGAAGATGAAAGAGACACTTATGGCAGCAACATGTTGATGTATAACATCTCAAATGGCTTGAATGACTCTGGATTTTTGTGA 1122 0.3922 MTKSNSSSEKNGLKKGPWTPEEDQKLVDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFQEEETIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLMKMGIDPVTHTPRLDVLQLVSILNSSLYNSPQFNNHHGLYGMGNVINPSQLLNLLTTLLSCQSRNPNVLNHSFQQNQVGNSPLFQNQSQFSQPMQQLNSTQTQAFQPNQPQVVQENHCSTSNPLHMEPQLMKTTLENQISQIASPFRNQNTLPNLWQDTEGAESSAIPCFSSPKFNSMINNIMENQILCNNEGIPDFNLSSLLSSTPSSSSSPSTLKSSSSTTFVNGTTTEDERDTYGSNMLMYNISNGLNDSGFL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2527g00016 373 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Gabi2527g00016 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Gabi2527g00016 373 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Gabi2527g00016 373 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 270 - -
Gabi2527g00016 373 MobiDBLite consensus disorder prediction 1 22 - -
Gabi2527g00016 373 Gene3D - 70 117 - -
Gabi2527g00016 373 FunFam Transcription factor MYB39 70 131 - -
Gabi2527g00016 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Gabi2527g00016 373 SMART sant 14 64 IPR001005 -
Gabi2527g00016 373 SMART sant 67 115 IPR001005 -
Gabi2527g00016 373 MobiDBLite consensus disorder prediction 320 353 - -
Gabi2527g00016 373 Gene3D - 14 67 - -
Gabi2527g00016 373 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Gabi2527g00016 373 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Gabi2527g00016 373 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Gabi2527g00016 373 CDD SANT 70 113 IPR001005 -
Gabi2527g00016 373 CDD SANT 17 62 IPR001005 -
Gabi2527g00016 373 FunFam MYB-related transcription factor 14 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2527g00016 Gabi-Chr2527 326775 328666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2527g00016 9 373 MYB Transcription Factor Family AT4G21440 48.276 1.43e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi2527g00016 Myb_DNA-binding 3e-16 CL0123