Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2527g00012 ATGGAAGCCAGTGCTGGACTAGTTGCTGGATCACACAACCGCAATGAGCTAGTGGTCATTCATGGCCATGAAGAGCACAAGCCTTTGAAGAACTTGGATGGCCAGGTTTGTGAGATTTGTGGCGATGGTGTTGGACTCACGGTGGATGGAGACTTGTTTGTTGCCTGCAATGAGTGTGGTTTTCCGGTGTGCCGGCCGTGCTATGAGTACGAAAGGAGAGAAGGGAGCCAACTTTGTCCACAGTGCAAGACCAGATATAAGCGTCTCAAAGGGAGCCCGCGAGTGGAGGGAGATGAAGATGAAGAGGATGTGGATGATATTGAACATGAGTTCAATATTGAGGACCAAAGGAACAAGCATGGCCATACTGCAGAAGCCATGCTTCATGGGAAGATGAGCTATGGAAGAGGTCCTGAAGATGATGAGAATGCTCAGTTCCCACATGTTATTGCTGGTGGTCTTTCTCGCCCTGTAAGTGGGGAGTTCCCAATATCATCCAATGGTTATGGGGATCAGATGTTATCATCTTCACTGCATAAAAGAGTTCATCCATATCCCATGTCAGAACCTGAGGAGGGATGGAAAGATAGAATGGATGACTGGAAATTGCAGCAAGGAAATTTGGGGCCTGAACCTGATGAAGATCAAGATGCAGCTATGTTAGATGAAGCAAGACAACCACTATCAAGGAAAGTGCCAATAGCATCAAGCAAAATCAATCCATATAGGATGGTGATTGTGGCAAGGCTTGTTATTCTTGCTTTCTTCCTCAGATACAGAATCATGAACCCAGTTCATGATGCAATCGGACTATGGCTAACCTCTATTGTATGTGAAATCTGGTTTGCTTTTTCATGGATTCTTGATCAGTTTCCCAAATGGTTTCCTATTGAACGAGAAACCTACCTTGATCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCTATAGATTTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTCTGGTTACAGCAAACACTGTTCTTTCAATATTGGCCATAGATTACCCTGTTGATAAGATATCATGCTACATTTCTGATGATGGAGCTTCAATGTGTACATTTGAATCCCTTTCAGAAACTGCAGAGTTTGCTCGGAAGTGGGTACCGTTTTGTAAGAAATTTTCTATAGAACCTCGTGCACCTGAGATGTACTTTAGTGAGAAAATTGACTACCTCAAGGACAAAGTTCAACCCACCTTTGTTAAGGAGCGTAGAGCTATGAAGAGAGAATATGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAAGCACAGAAAGTTCCTCCAGGAGGGTGGATCATGCAAGATGGGACACCTTGGCCAGGGAACAACACTAGGGATCATCCTGGTATGATTCAAGTGTTTCTTGGTAACAATGGAGGTCTTGATGCTGAAGGAAACCAGCTTCCTCGCCTTGTTTATGTTTCCAGAGAGAAAAGGCCTGGTTTTCAACATCACAAGAAAGCTGGTGCCATGAATGCTTTGGTTCGGGTGTCTGCTGTTCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCATTATGTGAATAATAGTAAGGCTGCCAGAGAGGCCATGTGCTTCTTGATGGACCCTCAAACTGGGAAAAAGATCTGCTATGTCCAGTTTCCTCAGAGATTCGATGGCATTGATACACATGATCGTTATGCTAACAGGAACACGGTTTTCTTTGATATTAACATGAAGGGTCTAGATGGTATTCAGGGTCCTGTATATGTGGGCACAGGTTGTGTTTTTAGGAGGCAAGCTTTATATGGCTATAATCCTCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGCCCATGTTTTGGAAGCCGCAAGAAGAATAAGCATGCAAAGAGTGATGCAAATGGAGAGGCTGCAAGCCTAAAAGGGATGGATGATGACAAAGAGATTCTGATGTCCCAGATGAATTTTGAGAAGAAATTTGGGCAGTCATCTATTTTTGTGACTTCAACCTTGATGGAAGAGGGTGGTGTGCCTCCTTCCTCAAGTCCAGCAGGTCTGCTTAAAGAAGCCATTCATGTAATCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGCTTGGTTGGATCTATGGATCTATCACAGAGGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCCATTTACTGCGTGCCAAAGAGACCTGCATTCAAGGGTACTGCTCCTATCAACTTGTCAGATAGACTTAACCAGGTGCTTCGTTGGGCCCTTGGCTCCATTGAGATCTTCTTCAGTCGCCATTGTCCTTTATGGTATGGTTTCAAGGAAAAGAAGCTAAAGTGGCTTGAGAGATTTGCCTATGCAAACACAACTGTCTACCCTTTCACCTCCATACCTCTAGTTGCCTACTGTATTCTTCCTGCAATTTGCTTACTCACTGACAAATTCATCATGCCGCCGATAAGCACTTTTGCTGGTTTGTATTTCATTGCTCTCTTCTCTTCAATCATTGCGACCGGTGTTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGAAATGAACAATTCTGGGTCATTGGTGGTGTATCAGCACACCTGTTTGCTGTTATACAAGGTCTTTTGAAGGTTCTAGGTGGAATTGACACCAACTTCACTGTTACATCCAAAGCAACAGATGATGAAGAGTTTGGAGAATTATACACCTTTAAATGGACCACTCTCCTAATTCCTCCAACCACTATCTTAATCATCAACATTGTTGGTGTTGTTGCTGGAATCTCAGATGCCATAAACAACGGATACCAATCTTGGGGACCACTATTTGGAAAGCTATTCTTTTCCTTTTGGGTGATTGTTCATCTGTATCCATTCCTTAAAGGTTTGATGGGTAGACAAAACCGCACACCAACAATTGTTGTGATTTGGTCAGTGCTATTGGCTTCTATTTTCTCCTTGCTTTGGGTAAGAATTGATCCATTTGTCCTCAAGACTAAGGGACCAGATACCAAGCTATGTGGAATCAACTGCTAG 3093 0.4358 MEASAGLVAGSHNRNELVVIHGHEEHKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDEDEEDVDDIEHEFNIEDQRNKHGHTAEAMLHGKMSYGRGPEDDENAQFPHVIAGGLSRPVSGEFPISSNGYGDQMLSSSLHKRVHPYPMSEPEEGWKDRMDDWKLQQGNLGPEPDEDQDAAMLDEARQPLSRKVPIASSKINPYRMVIVARLVILAFFLRYRIMNPVHDAIGLWLTSIVCEIWFAFSWILDQFPKWFPIERETYLDRLSIRYEREGEPNMLAPIDFFVSTVDPMKEPPLVTANTVLSILAIDYPVDKISCYISDDGASMCTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPPGGWIMQDGTPWPGNNTRDHPGMIQVFLGNNGGLDAEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKICYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKNKHAKSDANGEAASLKGMDDDKEILMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAGLLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCVPKRPAFKGTAPINLSDRLNQVLRWALGSIEIFFSRHCPLWYGFKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAICLLTDKFIMPPISTFAGLYFIALFSSIIATGVLELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLGGIDTNFTVTSKATDDEEFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2527g00012 1030 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 109 IPR013083 -
Gabi2527g00012 1030 Pfam Cellulose synthase 322 1024 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gabi2527g00012 1030 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Gabi2527g00012 1030 FunFam Cellulose synthase 439 613 - -
Gabi2527g00012 1030 FunFam Cellulose synthase 19 110 - -
Gabi2527g00012 1030 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 225 997 - -
Gabi2527g00012 1030 CDD mRING-HC-C4C4_CesA 35 85 - -
Gabi2527g00012 1030 SUPERFAMILY RING/U-box 21 107 - -
Gabi2527g00012 1030 SUPERFAMILY Nucleotide-diphospho-sugar transferases 336 845 IPR029044 -
Gabi2527g00012 1030 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Gabi2527g00012 1030 Coils Coil 420 440 - -
Gabi2527g00012 1030 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 462 613 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2527g00012 Gabi-Chr2527 283476 289434 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2527g00012 1 1030 Cell Wall Biosynthesis AT5G17420 86.157 0.0 1845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2527g00012 K10999 - gmx:100815436 2029.99