Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2527g00011 ATGGAAGCTAGGACTGGACTTTTTGCAGGGTCTCATAACAGCAATGAGCTTTTGGTTGTTCAAGGACGCGATGAGCCTAAGCATGTGAAGAACTTAGATGGTCAACTCTGTGACATATGTGGTGATTCTGTGGGACTTACGGTGGATGGAGACTTGTTTGTAGCTTGTGAGGAGTGTGGTTTCCCAGTGTGCAGGCCATGCTATGAGTATGAAAGAAGGGAAGGGACTCAAGTTTGCCCTCAGTGTCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTGGAGGGAGATGAAGATGAAGATGATGTGGATGATATTGAACATGAATTCAAAATGGAAGAAGAAAAGTACAAGCTTCAGTATGAAGAGAAGCTGCAAGGGAAAATGAACCATGGAGATGATAATGAGAACTCTAAATCAATACCGGTAGGTTTAGCAAATGTGAATGGGGAGCTACCCATATCTTCTCACAGTATTGGAGAACCTGGTGGTGCAAAATTGCATGACAAGGAGAAAATAGATGACTGGAAGTTGAGTCAAGGCAATCTGATGCCTGAAACTGATGCCTCAGTTGATCCTGAAAAGGCCATGAAAGATGAAACTAGACAGCCACTCTCAAGGAAAGTAGCAATACCATCAGGCAGACTCAGTCCTTATAGAATGATGGTTGCGGCTCGGTTCATCATTCTATTACTCTTCTTTCAGTACAGAATCTTCCACCCAGTACCTGATGCAATTGGACTCTGGTTCACATCTGTAATATGTGAAATCTGGCTTGCATTGTCATGGCTGGTTGATCAGATTCCAAAATGGTTTCCTATTGATCGCGAGACATACCTTGATCGTCTTTCAATCAGGTTTGAACCGGAGAACAAGCCAAACATGCTTTCTCCAATAGATATCTTTGTCACTACCATAGATCCAATCAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTTGGCCTTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAATTTGCGCGAAAGTGGGTACCTTTCTGCAAAAAATTTTCTGCAGAACCTAGAGCACCAGAGAAGTACTTTTCTGAGAAGATAGATTATATGAAGGATAAGCTTCAGTCCACATACGTAAAAGAACGTCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTGGCTAAATCCATGAGAGTTCCCCCAGAAGGGTGGACTATGCAAGATGAGACACCATGGCCAGGAAACAATACCAAAGATCATCCAAGTATGATACAAATCCTTCTTGCTAAGAATGGAGGCCATGAAGGTAATGAACTTCCTTGCCTTGTCTACATATCTCGCGAGAAAAGGCCTGCATTTCAACACCACAGCAAAGCTGGTGCAATGAATGCCTTGCTACGCGTGTCAGCCGTGCTAAGCAATGCTCCTTTCGTGCTGAACTTGGATTGCAATCATTATGTGAATAACAGCAAAGTCGTGCGAGAGGCCATGTGTTTCTTTATGGACATACAACTTGGGAATACCATTGGCTTTGTCCAGTTTCCACTAAGATTTGACAGCCTAGATAGACATGATCGTTATGCCAATAAAAACAGTGTTTTATTTGATATTAACATGAGGTGCCTTGATGGAATTCAAGGACCAGCTTATGTTGGTTCAGCATGTATCTTCAGAAGGAACGCTTTTTATGGCTTTGATTCTCCAAAGGCTTCGAAACGCCCACGAATAGTGCAAGTGCACTCAAAACAGGATGAAAATGGAGAGGATGGAAGCATAACAGCAGCAACAGATGAAGACAAGCAGCTATTGAAGTCACAGATGAATGCTGAAAATAAATTTGGAAACTCAACACTTTTTGTGAATTCTTCAATAACAGAAGAAGGTGGTGCTGATCCTTCTTCAAGTCAGGAAGCCCTGCTTAAAGAAGCCATTCATGTCATGAGTTGTAGCTATGAAGACAGAACTCTCTGGGGATATGAGATAGGTTTGAGTTATGGATCTATAGCAGCAGATATGCTTGCAAGTTTCAAGATGCATTGTCATGGTTGGAGATCTGTATACTGCATGCCAAAGAGACCTGCATTCAGGGGTACAGCTCCTATCAACCTTACAGATAGACTAAACCAGGTGTTAAGATGGGCAGTGGGATCACTTCAGATCCTCTTCAGCCGCCATTGCCCACTATGGTATGGCTTCAAGGAAGGAAGACTCAAGGGGCTTCAGAGAATTGCTTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCTCTCCTAATATATTGTCTCATTCCTGCAATCTGCTTGCTCACTGACAAATTCATCACACCATCGGTAGGAACTTTTGCAAGTCTAATATTTATTTCTCTGTTCATCTCAATCTTTGCTTCGGCTATTCTTGAATTGAGATGGAGTGGAGTTGGCCTTGAGGAATGGTGGAGAAATCAGCAATTCTGGGTCATTGGCAGTGTGTCTGCAAACCTCTTTGCCCTTGTACAAGGCCTAATGGGAGCCCTAGCTAAAGTTAATAATACAAACTTCAGTGTTGCATCAAAGGCCCCAGATGATGGGGAGTTTCGTGAACTATACACAATTAAATGGACTGCACTCCTAATACCTCCAACTACTATCATAATAATCAACCTTATTGGTATTGTAGCAGGGTTCACAGATGCCATAAACAGTGGTGAACATTCTTGGGGAGCAATGCTTGGGAAGCTCTTCTTTTCTTCATGGGTTATTGTCCATTTGTACCCTTTCCTTAAAGGTCTGATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTTTTGGCTTCTATCTTCTCCTTGGTTTGGGTAAGAATTGACCCTTTTGTGTTAAAAACTAAGGGGCCTGATATCAAGCAATGTGGAATCAGTTGCTGA 2988 0.4237 MEARTGLFAGSHNSNELLVVQGRDEPKHVKNLDGQLCDICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKMEEEKYKLQYEEKLQGKMNHGDDNENSKSIPVGLANVNGELPISSHSIGEPGGAKLHDKEKIDDWKLSQGNLMPETDASVDPEKAMKDETRQPLSRKVAIPSGRLSPYRMMVAARFIILLLFFQYRIFHPVPDAIGLWFTSVICEIWLALSWLVDQIPKWFPIDRETYLDRLSIRFEPENKPNMLSPIDIFVTTIDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFARKWVPFCKKFSAEPRAPEKYFSEKIDYMKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMQDETPWPGNNTKDHPSMIQILLAKNGGHEGNELPCLVYISREKRPAFQHHSKAGAMNALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNTIGFVQFPLRFDSLDRHDRYANKNSVLFDINMRCLDGIQGPAYVGSACIFRRNAFYGFDSPKASKRPRIVQVHSKQDENGEDGSITAATDEDKQLLKSQMNAENKFGNSTLFVNSSITEEGGADPSSSQEALLKEAIHVMSCSYEDRTLWGYEIGLSYGSIAADMLASFKMHCHGWRSVYCMPKRPAFRGTAPINLTDRLNQVLRWAVGSLQILFSRHCPLWYGFKEGRLKGLQRIAYINSTVYPFSSIPLLIYCLIPAICLLTDKFITPSVGTFASLIFISLFISIFASAILELRWSGVGLEEWWRNQQFWVIGSVSANLFALVQGLMGALAKVNNTNFSVASKAPDDGEFRELYTIKWTALLIPPTTIIIINLIGIVAGFTDAINSGEHSWGAMLGKLFFSSWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDIKQCGISC 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2527g00011 995 SUPERFAMILY RING/U-box 22 107 - -
Gabi2527g00011 995 FunFam Cellulose synthase 19 110 - -
Gabi2527g00011 995 MobiDBLite consensus disorder prediction 184 205 - -
Gabi2527g00011 995 Pfam Cellulose synthase 612 989 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gabi2527g00011 995 Pfam Cellulose synthase 300 599 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gabi2527g00011 995 CDD mRING-HC-C4C4_CesA 35 85 - -
Gabi2527g00011 995 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Gabi2527g00011 995 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Gabi2527g00011 995 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 202 962 - -
Gabi2527g00011 995 SUPERFAMILY Nucleotide-diphospho-sugar transferases 312 807 IPR029044 -
Gabi2527g00011 995 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 438 590 IPR029044 -
Gabi2527g00011 995 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 289 395 IPR029044 -
Gabi2527g00011 995 Coils Coil 398 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2527g00011 Gabi-Chr2527 275800 280845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2527g00011 1 995 Cell Wall Biosynthesis AT5G17420 65.728 0.0 1413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2527g00011 K10999 - gmx:100777270 1706.03