Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2527g00010 ATGGAAGCTAGGACTGGACTTTTTGCAGGGTCTCATAACAGCAATGAGCTTTTGGTTGTTCAAGGACGCGATGAGCCTAAGCATGTGAAGAACTTAGATGGTCAACTCTGTGACATATGTGGTGATTCTGTGGGACTTACGGTGGATGGAGACTTGTTTGTAGCTTGTGAGGAGTGTGGTTTCCCAGTGTGCAGGCCATGCTATGAGTATGAAAGAAGGGAAGGGACTCAAGTTTGCCCTCAGTGTCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTGGAGGGAGATGAAGATGAAGATGATGTGGATGATATTGAACATGAATTCAAAATGGAAGAAGAAAAGTACAAGCTTCAGTATGAAGAGAAGCTGCAAGGGAAAATGAACCATGGAGATGATAATGAGAACTCTAAATCAATACCGCTACCCATATCTTCTCACAGTATTGGAGAACCTGGTGGTGCAAAATTGCATGACAAGGAGAAAATAGATGACTGGAAGTTGAGTCAAGGCAATCTGATGCCTGAAACTGATGCCTCAGTTGATCCTGAAAAGGCCATGAAAGATGAAACTAGACAGCCACTCTCAAGGAAAGTAGCAATACCATCAGGCAGACTCAGTCCTTATAGAATGATGGTTGCGGCTCGGTTCATCATTCTATTACTCTTCTTTCAGTACAGAATCTTCCACCCAGTACCTGATGCAATTGGACTCTGGTTCACATCTGTAATATGTGAAATCTGGCTTGCATTGTCATGGCTGGTTGATCAGATTCCAAAATGGTTTCCTATTGATCGCGAGACATACCTTGATCGTCTTTCAATCAGGTTTGAACCGGAGAACAAGCCAAACATGCTTTCTCCAATAGATATCTTTGTCACTACCATAGATCCAATCAAGGAACCTCCTCTAGTTACAGCCAATACTGTTCTTTCAATCTTGGCCTTGGATTACCCTGCTGACAAAATCTCATGCTATGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAATTTGCGCGAAAGTGGGTACCTTTCTGCAAAAAATTTTCTGCAGAACCTAGAGCACCAGAGAAGTACTTTTCTGAGAAGATAGATTATATGAAGGATAAGCTTCAGTCCACATACGTAAAAGAACGTCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTGGCTAAATCCATGAGAGTTCCCCCAGAAGGGTGGACTATGCAAGATGAGACACCATGGCCAGGAAACAATACCAAAGATCATCCAAGTATGATACAAATCCTTCTTGCTAAGAATGGAGGCCATGAAGGTAATGAACTTCCTTGCCTTGTCTACATATCTCGCGAGAAAAGGCCTGCATTTCAACACCACAGCAAAGCTGGTGCAATGAATGCCTTGCTACGCGTGTCAGCCGTGCTAAGCAATGCTCCTTTCGTGCTGAACTTGGATTGCAATCATTATGTGAATAACAGCAAAGTCGTGCGAGAGGCCATGTGTTTCTTTATGGACATACAACTTGGGAATACCATTGGCTTTGTCCAGTTTCCACTAAGATTTGACAGCCTAGATAGACATGATCGTTATGCCAATAAAAACAGTGTTTTATTTGATATTAACATGAGGTGCCTTGATGGAATTCAAGGACCAGCTTATGTTGGTTCAGCATGTATCTTCAGAAGGAACGCTTTTTATGGCTTTGATTCTCCAAAGGCTTCGAAACGCCCACGAATAGTGCAAGTGCACTCAAAACAGGATGAAAATGGAGAGGATGGAAGCATAACAGCAGCAACAGATGAAGACAAGCAGCTATTGAAGTCACAGATGAATGCTGAAAATAAATTTGGAAACTCAACACTTTTTGTGAATTCTTCAATAACAGAAGAAGGTGGTGCTGATCCTTCTTCAAGTCAGGAAGCCCTGCTTAAAGAAGCCATTCATGTCATGAGTTGTAGCTATGAAGACAGAACTCTCTGGGGATATGAGATAGGTTTGAGTTATGGATCTATAGCAGCAGATATGCTTGCAAGTTTCAAGATGCATTGTCATGGTTGGAGATCTGTATACTGCATGCCAAAGAGACCTGCATTCAGGGGTACAGCTCCTATCAACCTTACAGATAGACTAAACCAGGTGTTAAGATGGGCAGTGGGATCACTTCAGATCCTCTTCAGCCGCCATTGCCCACTATGGTATGGCTTCAAGGAAGGAAGACTCAAGGGGCTTCAGAGAATTGCTTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCTCTCCTAATATATTGTCTCATTCCTGCAATCTGCTTGCTCACTGACAAATTCATCACACCATCGGTAGGAACTTTTGCAAGTCTAATATTTATTTCTCTGTTCATCTCAATCTTTGCTTCGGCTATTCTTGAATTGAGATGGAGTGGAGTTGGCCTTGAGGAATGGTGGAGAAATCAGCAATTCTGGGTCATTGGCAGTGTGTCTGCAAACCTCTTTGCCCTTGTACAAGGCCTAATGGGAGCCCTAGCTAAAGTTAATAATACAAACTTCAGTGTTGCATCAAAGGCCCCAGATGATGGGGAGTTTCGTGAACTATACACAATTAAATGGACTGCACTCCTAATACCTCCAACTACTATCATAATAATCAACCTTATTGGTATTGTAGCAGGGTTCACAGATGCCATAAACAGTGGTGAACATTCTTGGGGAGCAATGCTTGGGAAGCTCTTCTTTTCTTCATGGGTTATTGTCCATTTGTACCCTTTCCTTAAAGGTCTGATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTTTTGGCTTCTATCTTCTCCTTGGTTTGGGTAAGAATTGACCCTTTTGTGTTAAAAACTAAGGGGCCTGATATCAAGCAATGTGGAATCAGTTGCTGA 2961 0.4235 MEARTGLFAGSHNSNELLVVQGRDEPKHVKNLDGQLCDICGDSVGLTVDGDLFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKMEEEKYKLQYEEKLQGKMNHGDDNENSKSIPLPISSHSIGEPGGAKLHDKEKIDDWKLSQGNLMPETDASVDPEKAMKDETRQPLSRKVAIPSGRLSPYRMMVAARFIILLLFFQYRIFHPVPDAIGLWFTSVICEIWLALSWLVDQIPKWFPIDRETYLDRLSIRFEPENKPNMLSPIDIFVTTIDPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFARKWVPFCKKFSAEPRAPEKYFSEKIDYMKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMQDETPWPGNNTKDHPSMIQILLAKNGGHEGNELPCLVYISREKRPAFQHHSKAGAMNALLRVSAVLSNAPFVLNLDCNHYVNNSKVVREAMCFFMDIQLGNTIGFVQFPLRFDSLDRHDRYANKNSVLFDINMRCLDGIQGPAYVGSACIFRRNAFYGFDSPKASKRPRIVQVHSKQDENGEDGSITAATDEDKQLLKSQMNAENKFGNSTLFVNSSITEEGGADPSSSQEALLKEAIHVMSCSYEDRTLWGYEIGLSYGSIAADMLASFKMHCHGWRSVYCMPKRPAFRGTAPINLTDRLNQVLRWAVGSLQILFSRHCPLWYGFKEGRLKGLQRIAYINSTVYPFSSIPLLIYCLIPAICLLTDKFITPSVGTFASLIFISLFISIFASAILELRWSGVGLEEWWRNQQFWVIGSVSANLFALVQGLMGALAKVNNTNFSVASKAPDDGEFRELYTIKWTALLIPPTTIIIINLIGIVAGFTDAINSGEHSWGAMLGKLFFSSWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDIKQCGISC 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2527g00010 986 SUPERFAMILY RING/U-box 22 107 - -
Gabi2527g00010 986 FunFam Cellulose synthase 19 110 - -
Gabi2527g00010 986 Coils Coil 389 409 - -
Gabi2527g00010 986 MobiDBLite consensus disorder prediction 129 158 - -
Gabi2527g00010 986 CDD mRING-HC-C4C4_CesA 35 85 - -
Gabi2527g00010 986 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Gabi2527g00010 986 Pfam Cellulose synthase 603 980 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gabi2527g00010 986 Pfam Cellulose synthase 291 590 IPR005150 GO:0016020|GO:0016760|GO:0030244
Gabi2527g00010 986 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Gabi2527g00010 986 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 280 386 IPR029044 -
Gabi2527g00010 986 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 429 581 IPR029044 -
Gabi2527g00010 986 MobiDBLite consensus disorder prediction 175 196 - -
Gabi2527g00010 986 SUPERFAMILY Nucleotide-diphospho-sugar transferases 303 798 IPR029044 -
Gabi2527g00010 986 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 193 953 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2527g00010 Gabi-Chr2527 275800 280845 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2527g00010 1 986 Cell Wall Biosynthesis AT5G17420 65.437 0.0 1407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2527g00010 K10999 - gmx:100777270 1683.31