Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2527g00001 ATGGGTTTGCTTCCATTTTCAATGGTACTATTTCTCTATTTGGCCATTGCTCCTTGTAGAGTTTATGGGGAGGAAAATGTTACAATAGTGAATGAAAAAAATTCACTAGTTTCATTCATGTCAGGCATTGTTTCTGACCCTAAAAACGTTCTAGAGACTTGGAATTCACCAGGTGTTCATGTTTGCAATTGGTTTGGTGTCAAATGCAACAATGCAACTAACAGGATCATAGAGCTTGATCTTAATGGTAGCTCACTAAGGGGTACCATTTCCCCTGCTCTTGCAAACCTCTCTTCCTTGCAAATTCTTGATCTTTCTGAGAATTTTTTTGTGGGTCATATTCCAAAAGAACTGGGCTATTTAATTCAGCTTCAACAACTCAGTTTATCTTTTAATTTTCTTGAAGGGAATATTCCCTCTGAGTTGGGTTCACTTCACAACTTGTACTACCTTAACTTGGGAACTAATCATCTCAAGGGTGAGATTCCTTCATCACTTTTTTGCAATGGGTCTTCCACATTGAGTTATATAGACCTCTCTAACAATTCCTTGGGGGGACAAATACCCTTGAGCAATGAGTGTATCCTCAAAAAGCTTATGTTCCTCTTACTTTGGTCTAACAAGCTTGTAGGTCAAGTTCCTTTAGCTCTATCAAACTCCACAGAACTTAAATGGCTCGATGTGGAGTCAAATATGTTGAGTGGGGAGCTACCATCTGAGATTGTGCATAATTGGCCACAATTACAATTCCTCTACCTATCATATAATAACTTTGTCAGCCATGATAGTAACACCAACCTTGAAACTTTCTTTTCTTCCTTGATGAATTTGTCCAACATTCAAGCACTCGAGTTGGCAGGAAACAATCTTGGAGGGAAGCTACCTCGTAACATTGGTGATCTTCCGACCAGCTTGTTACAGCTTCACCTAGAAGACAATCTCATATATGGTTCTATACCTCCAAACATTGCCAACCTTGTCAATCTAACTCTCTTAAACATTTCTGGTAACTTACTAAATGGATCAATACCTCCCAGTCTCTGCCAGATGGGAAGGCTAGAGAGAATTTATTTGTCAAATAATTCACTATTTGGTGAGATTCCCTCAACCCTTGGTGGCATTCAGCATCTGGGGCTTCTAGACTTGTCAAGAAACAAGCTTTCTGGTTCACTACCAGACAGTTTTGCTGACCTCCCCCAGTTAAGAAGTCTTTTACTTTATGACAACCAGCTATCTGGAACAATCCCACCAAGTCTGGGAAAATGTGTCAATTTGGAGATTTTGGACCTATCCCACAACAAGATTTCAGGTCTGATTCCTACAGAAGTTGCAGCCTTGACTAGCTTGAAACTATACTTGAATTTATCAAGCAATAACTTACAAGGGCCTTTGCCATTTGAGCTCTCCAAAATGGACATGGTGCTAGCTATTGATCTATCCATGAACAATCTCTCTGGCAGAATCCCACCACAGCTTGAAAGTTGCTTAGCACTAGAGTACCTTAACCTTTCTGGTAACAACTTAGAAGGCCCTCTTCCTGATTTATTAGGCCAATTGCCTTATATTAGAGCTCTTGATGTGTCTTCAAATCAGTTAACTGGCCAAATACCACAGTCCCTTCAGTTGTCCACCACTCTCAAGAAACTTAATTTCTCTTTCAACAAATTCTCAGGGAGGGTCTCAAACAAGGGAGATTTTTCATCATTGACCATAAACTCTTTCCTAGGAAATGATGGTCTATGTGGCTCGGTAAAAGGCATGCAAAGCTGCCACAAGAAACACAGATATCATTTGGTTCTCTTATTCATTCCATTGTTACTATTTGGAACCCCCTTGTTGTGCATGTTTGGGTACCCCAGAATTATTAAGTCAAAGGTCAGAAAGCAATTGGCAATAGTTAGCAGAGGGGACTTGGAGGATGAAGATGAGGAAACAAAGGAACTTAAGTACCCAAGAATTTCATATAAACAACTTATTGAAGCCACTGGAGGCTTCAGTGCTTCAAGCCTAATTGGTTCAGGAAGGTTTGGACAGGTCTATAATGGAGTTCTCCGAGATAATACAAGAATTGCAGTGAAGGTATTAGATACATCAACAGCATGCGAGATTTCAGGTAGCTTCAAAAGGGAATGTCAAATCCTGAAAAGAACCAGGCACAGAAATTTAATAAGGATCATCACAATATGCAGTAAAAAAGAGTTTAAGGCTCTTGTTCTTCCACTGATGCCAAATGGTAGCCTAGAGAGGCACTTATATCCAAGCCATGGGTTAAGCCAGAGGTTGGATATTGTTCAGATAGTGAGGATATGCAGTGATGTAGCTGAGGGAATGGCTTATCTGCACCACTATTCTCCAGTTAGAGTAGTGCACTGTGATCTTAAGCCAAGCAATATACTACTTGATGACGATTTTACAGCTTTGGTAACTGATTTTGGTATTGCAAGGCTTGTAAAAGGTGATGAGAACATGAACCCCAGTGGCTCAACATCTTTCAGTTCAACACATGGTTTATTATGTGGCTCCCTTGGCTACATAGCCCCTGAATATGGAATGGGAAAACATGCATCAACTCAGGGTGATGTTTACAGTTTTGGAGTACTTCTGCTAGAAATAGTGACAGGTAAACGCCCCACAGATGTCCTTATCCATGAAGGCTCTAGCTTGCATGAGTGGATTAAGAGACAATATCCACACAAGATTGATAACATTGTTGAACAAGCATTGCAAAGGTGCTATCCATCTTGCATGACAAGTCACTGTAACAAAATTGGACAAGATGTTATATTGGAACTCATAGAGTTGGGGCTTCTATGCACACACCCTAATCCTTCAACAAGACCAAGCATGCTGGATGTAGCCCAAGAAATGGGGAAGTTGAAGGACTACCTCTCTAATCAATCCTCTCTGCTGATTGAAGAAGTCAATGCTAAGGTTAATTCTCATGCAGTGAAGATAAATTTAGTTGGAAAGTGA 2973 0.4026 MGLLPFSMVLFLYLAIAPCRVYGEENVTIVNEKNSLVSFMSGIVSDPKNVLETWNSPGVHVCNWFGVKCNNATNRIIELDLNGSSLRGTISPALANLSSLQILDLSENFFVGHIPKELGYLIQLQQLSLSFNFLEGNIPSELGSLHNLYYLNLGTNHLKGEIPSSLFCNGSSTLSYIDLSNNSLGGQIPLSNECILKKLMFLLLWSNKLVGQVPLALSNSTELKWLDVESNMLSGELPSEIVHNWPQLQFLYLSYNNFVSHDSNTNLETFFSSLMNLSNIQALELAGNNLGGKLPRNIGDLPTSLLQLHLEDNLIYGSIPPNIANLVNLTLLNISGNLLNGSIPPSLCQMGRLERIYLSNNSLFGEIPSTLGGIQHLGLLDLSRNKLSGSLPDSFADLPQLRSLLLYDNQLSGTIPPSLGKCVNLEILDLSHNKISGLIPTEVAALTSLKLYLNLSSNNLQGPLPFELSKMDMVLAIDLSMNNLSGRIPPQLESCLALEYLNLSGNNLEGPLPDLLGQLPYIRALDVSSNQLTGQIPQSLQLSTTLKKLNFSFNKFSGRVSNKGDFSSLTINSFLGNDGLCGSVKGMQSCHKKHRYHLVLLFIPLLLFGTPLLCMFGYPRIIKSKVRKQLAIVSRGDLEDEDEETKELKYPRISYKQLIEATGGFSASSLIGSGRFGQVYNGVLRDNTRIAVKVLDTSTACEISGSFKRECQILKRTRHRNLIRIITICSKKEFKALVLPLMPNGSLERHLYPSHGLSQRLDIVQIVRICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDDDFTALVTDFGIARLVKGDENMNPSGSTSFSSTHGLLCGSLGYIAPEYGMGKHASTQGDVYSFGVLLLEIVTGKRPTDVLIHEGSSLHEWIKRQYPHKIDNIVEQALQRCYPSCMTSHCNKIGQDVILELIELGLLCTHPNPSTRPSMLDVAQEMGKLKDYLSNQSSLLIEEVNAKVNSHAVKINLVGK 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2527g00001 990 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 367 594 - -
Gabi2527g00001 990 Gene3D Ribonuclease Inhibitor 473 583 IPR032675 -
Gabi2527g00001 990 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 271 366 - -
Gabi2527g00001 990 SMART LRR_typ_2 97 121 IPR003591 -
Gabi2527g00001 990 SMART LRR_typ_2 374 397 IPR003591 -
Gabi2527g00001 990 SMART LRR_typ_2 277 301 IPR003591 -
Gabi2527g00001 990 SMART LRR_typ_2 145 169 IPR003591 -
Gabi2527g00001 990 SMART LRR_typ_2 398 422 IPR003591 -
Gabi2527g00001 990 SMART LRR_typ_2 326 350 IPR003591 -
Gabi2527g00001 990 SMART LRR_typ_2 423 445 IPR003591 -
Gabi2527g00001 990 SUPERFAMILY RNI-like 78 364 - -
Gabi2527g00001 990 SUPERFAMILY Protein kinase-like (PK-like) 646 954 IPR011009 -
Gabi2527g00001 990 CDD STKc_IRAK 671 959 - -
Gabi2527g00001 990 SUPERFAMILY L domain-like 337 582 - -
Gabi2527g00001 990 ProSiteProfiles Protein kinase domain profile. 665 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2527g00001 990 Gene3D Ribonuclease Inhibitor 266 366 IPR032675 -
Gabi2527g00001 990 Pfam Leucine Rich Repeat 498 516 IPR001611 GO:0005515
Gabi2527g00001 990 Pfam Leucine Rich Repeat 424 441 IPR001611 GO:0005515
Gabi2527g00001 990 ProSiteProfiles Leucine-rich repeat profile. 424 445 IPR001611 GO:0005515
Gabi2527g00001 990 Pfam Protein kinase domain 667 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2527g00001 990 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 742 968 - -
Gabi2527g00001 990 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Gabi2527g00001 990 Gene3D Ribonuclease Inhibitor 173 265 IPR032675 -
Gabi2527g00001 990 Gene3D Ribonuclease Inhibitor 367 472 IPR032675 -
Gabi2527g00001 990 Gene3D Phosphorylase Kinase; domain 1 636 740 - -
Gabi2527g00001 990 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 29 194 - -
Gabi2527g00001 990 Gene3D Transferase(Phosphotransferase) domain 1 742 983 - -
Gabi2527g00001 990 Pfam Leucine rich repeat N-terminal domain 32 70 IPR013210 -
Gabi2527g00001 990 SMART serkin_6 665 963 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2527g00001 990 Gene3D Ribonuclease Inhibitor 28 172 IPR032675 -
Gabi2527g00001 990 PANTHER RECEPTOR-LIKE PROTEIN 55 307 958 - -
Gabi2527g00001 990 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Gabi2527g00001 990 Pfam Leucine rich repeat 352 411 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2527g00001 Gabi-Chr2527 43490 47055 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2527g00001 32 967 Receptor kinase-like Gene Family AT3G47570 34.812 3.17e-161 499
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Gabi2527g00001 Pkinase 1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2527g00001 - - qsa:O6P43_022222 1446.8