Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2522g00001 ATGACCAAAGAAGGACTTGGACTTGAAATCACTGAGCTAAGATTGGGTCTTCCCGGTGGTGAGACTATAAGTGTGGTGAATAAGAATGAGAAGAAGAGGGTGTTCTCGGAGATTGACGGTGGTGGCGGAGGAGATGAAAACAGCTGCTCCGGTGACCTGAAAATCGAGAAGAAGAATCAAGTGGTGGTGGGGTGGCCTCCGGTGTGCTCGTACCGAAAAAAGAACAATGAAGCTTCAAAATTGTACGTCAAGGTTAGCATGGACGGTGCTCCCTTCTTGCGTAAAATTGATTTGGCTATGCATAAGGGATACTCCGAGTTAGCCTTCGCTTTGGAGAAGCTCTTTGGTTGCTATGGAATGGGCGAGGCGTTGAAGGATGCAGACAATTCTGAACACGTTCCCATTTATGAGGACAAAGATGGTGACTGGATGCTGGTTGGAGATGTCCCCTGGGAGATGTTTATCGAGTCATGCAAGAGGCTGAGGATTATGAAGAGATCAGATGCGAAGGGCTTCGTCTGCAACCAAAAAGATCTTTAA 540 0.4722 MTKEGLGLEITELRLGLPGGETISVVNKNEKKRVFSEIDGGGGGDENSCSGDLKIEKKNQVVVGWPPVCSYRKKNNEASKLYVKVSMDGAPFLRKIDLAMHKGYSELAFALEKLFGCYGMGEALKDADNSEHVPIYEDKDGDWMLVGDVPWEMFIESCKRLRIMKRSDAKGFVCNQKDL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2522g00001 179 FunFam Auxin-responsive protein 75 176 - -
Gabi2522g00001 179 SUPERFAMILY CAD & PB1 domains 73 165 - -
Gabi2522g00001 179 Pfam AUX/IAA family 55 172 IPR033389 -
Gabi2522g00001 179 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 169 IPR003311 GO:0005634|GO:0006355
Gabi2522g00001 179 Gene3D - 74 178 - -
Gabi2522g00001 179 ProSiteProfiles PB1 domain profile. 80 168 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2522g00001 Gabi-Chr2522 8229 11687 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2522g00001 56 170 B3 DNA Binding Superfamily AT4G23980 36.522 4.30e-13 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gabi2522g00001 AUX_IAA 5.9e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2522g00001 K14484 - gmx:100791342 276.559