Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi251g00013 ATGCTAAGTGGAGGCGCAGCCATATGCAACATGAGGAAGACATGGTTATGGTTTTCTCTTCTCACCCTCTTCTTCTCTTTCCACACCTACCCTTCCCTTGCAGCACCTCTCACCACCATCTCTGCAAACCAATCTCTCTCAGGTGACCAAACTCTGCTATCTCAAGGTGGGATCTTTGAACTGGGTTTCTTCAAGCCAGGTAATTCCTCTAACTACTACATAGGCACGTGGTACAAAAAGGTCACTCAACAGACAATTGTTTGGGTAGCTAACAGAGACCACCCTGTCTCTGACAAGAATAATGCCACGTTAACATTATCAGATGGTAATTTAGTTCTCTTAGATGGGTCTTCAAATCAAGTTTGGTCAACAAATTTGAGTATGAGTTCTCCTAGGCCAGGTTCTGTTGTAGCTGTACTCCTAGATACTGGGAATCTCATCTTGAGAGATAGGCCTAATGAAACATCAGATTTTCTATGGCAGAGTTTTGATCATCCAACAGATACATGGCTTCCAGGTGGCAAAATTAAACTTGATAATAAAACAAAGAAGCCTCAATATCTCACTTCATGGAAGAATAATCAAGATCCTGCAACGGGTCTCTTTTCTCTTGAACTAGACCCTAAAGGAACCACTTCATATCTTATTCTTTGGAATAAATCTGAAGAGTATTGGACAAGTGGCCCTTGGAATGGACACATTTTCAGCCTGGTACCCGAAATGAGGGCAAATTATATATACAATTTCACATTTGTGACAAACGAGAACGAGAGTTATTTCACCTACTCCATGTATAACTCTTCCATTATATCTCGGTTTGTTATGGATATCTCGGGGCAGATCAAGCAACTCTCGTGGTTGGATAATACTCAACAATGGAATTTGTTTTGGTCACAGCCAAGACGACAGTGTGAAGTTTATGCTTTCTGCGGTGCATTTGGGAGCTGCACTGAGTATTCAATGCCATTCTGTAACTGTTTAACTGGTTTTCAGCCCAAGTCACAATCTGACTGGGATCTAGGGGATCACTCAGGTGGGTGTAAGAGGAAAACCAATTTGCAATGCGGGAATTCCAATCCTTCTAATAGGGATAAGGATAGGTTCTTAGCAATCCCCAACATGGCATTACCTAAACATGCACAATCTGTGGGATCAGGGAATGTTGGGGAATGTGAATCAACCTGCTTGAACAACTGCTCCTGCATTGCTTATGCATATGGCAGTAATGGGTGTTCAATTTGGAATGGAGACCTACTGAATCTGCAACAACTATCTTCAGATGATAGTAGAGGAGAAACTATGTATCTCAAACTTGCAGCATCCGAGTTTCATGATGCTAAAAAGAGTAACGGGAAGATTATAGGTGTTGTTGTGGGGGCTGTTGTTGGCATAGGTGTTGTCCTGGCCCTTCTTTTATTTGTCATGATTAGGCGAAGGAGAATGGTTGGAACAGGAAAGCCTGTGGAGGGTTCATTGGTGGCATTTGGGTACAGAGATTTGCAAAATGCAACAAAGAATTTCTCTGATAAATTGGGAGGAGGAGGTTTTGGTTCTGTTTTCAAAGGAATGTTGGGTGATTCAAGTATCATAGCAGTGAAGAAGTTGGAAAGCATTAGCCAAGGAGAGAAGCAGTTCCGAACAGAAGTTAGTACAATAGGGACAATACAACATGTTAATCTCGTTCGGCTTCGTGGATTCTGCTCCGAAGGTGCCCAAAAGCTTCTGGTTTATGATTACATGCCAAATCGCTCCTTGGAATTCCATCTATTCCAGAACAAGAACTCTGGGGTGTTGGAATGGAAAATGAGATACCAAATTGCTCTTGGAGTAGCAAGGGGATTAACTTACCTCCATGAGAAGTGCAGAGACTGTATTATACACTGCGATGTAAAGCCAGAAAACATTCTCTTAGATGCTGAGTATTGTCCAAAAGTTGCAGACTTTGGGCTTGCAAAGCTAATTGGGAGGGATTTCAGCAGGGTCCTCACAACCATGAGAGGAACAAGAGGTTATCTTGCACCAGAGTGGATTTCTGGGGTGGCTATCACAGCTAAAGCTGATGTCTACAGCTATGGAATGATGCTTTTTGAGTTTGTGTCAGGTAGGAGAAACTCTGAGCCTTCAGAAGATGGCAAAGTTACGTTTTTTCCTACCTGCGCTGCAAACCTTGTTATCCAAGGTGGCAGTGTCCTTAGCCTTTTGGACCCTTTGTTGCAGGGAAATGCTGATATTGAAGAGGTCACTAGAATAATTAAAGTTGCTTCTTGGTGTGTCCAAGACAATGAAACTCACCGGCCAACCATGGGTCAGGTAGTTCAAATTCTTGAGGGGATCTTGGAGGTGACTTTGCCTCCAATTCCAAGATCCCTTCAAGTGTTTGGTGACAATCAGGAGAACTTAGTTTTCTTCACAGACTCAAGCTCAACCCAGAGTTCACAGGTAAAGAGCAACGTCTCAACAATCTCCTCCCAAGCCAAAAGCAACATCTCATCAGCAAGCTCCAAGTCCTCAGGAGGAAATTAG 2523 0.4289 MLSGGAAICNMRKTWLWFSLLTLFFSFHTYPSLAAPLTTISANQSLSGDQTLLSQGGIFELGFFKPGNSSNYYIGTWYKKVTQQTIVWVANRDHPVSDKNNATLTLSDGNLVLLDGSSNQVWSTNLSMSSPRPGSVVAVLLDTGNLILRDRPNETSDFLWQSFDHPTDTWLPGGKIKLDNKTKKPQYLTSWKNNQDPATGLFSLELDPKGTTSYLILWNKSEEYWTSGPWNGHIFSLVPEMRANYIYNFTFVTNENESYFTYSMYNSSIISRFVMDISGQIKQLSWLDNTQQWNLFWSQPRRQCEVYAFCGAFGSCTEYSMPFCNCLTGFQPKSQSDWDLGDHSGGCKRKTNLQCGNSNPSNRDKDRFLAIPNMALPKHAQSVGSGNVGECESTCLNNCSCIAYAYGSNGCSIWNGDLLNLQQLSSDDSRGETMYLKLAASEFHDAKKSNGKIIGVVVGAVVGIGVVLALLLFVMIRRRRMVGTGKPVEGSLVAFGYRDLQNATKNFSDKLGGGGFGSVFKGMLGDSSIIAVKKLESISQGEKQFRTEVSTIGTIQHVNLVRLRGFCSEGAQKLLVYDYMPNRSLEFHLFQNKNSGVLEWKMRYQIALGVARGLTYLHEKCRDCIIHCDVKPENILLDAEYCPKVADFGLAKLIGRDFSRVLTTMRGTRGYLAPEWISGVAITAKADVYSYGMMLFEFVSGRRNSEPSEDGKVTFFPTCAANLVIQGGSVLSLLDPLLQGNADIEEVTRIIKVASWCVQDNETHRPTMGQVVQILEGILEVTLPPIPRSLQVFGDNQENLVFFTDSSSTQSSQVKSNVSTISSQAKSNISSASSKSSGGN 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi251g00013 840 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Gabi251g00013 840 CDD B_lectin 43 166 IPR001480 -
Gabi251g00013 840 MobiDBLite consensus disorder prediction 809 840 - -
Gabi251g00013 840 SMART blect_4 43 166 IPR001480 -
Gabi251g00013 840 ProSitePatterns Protein kinases ATP-binding region signature. 511 534 IPR017441 GO:0005524
Gabi251g00013 840 ProSiteProfiles Bulb-type lectin domain profile. 37 161 IPR001480 -
Gabi251g00013 840 ProSiteProfiles Protein kinase domain profile. 505 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi251g00013 840 PIRSF SRK 9 827 IPR024171 GO:0004674
Gabi251g00013 840 Pfam Protein kinase domain 508 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi251g00013 840 ProSiteProfiles PAN/Apple domain profile. 355 439 IPR003609 -
Gabi251g00013 840 Pfam S-locus glycoprotein domain 225 334 IPR000858 GO:0048544
Gabi251g00013 840 Pfam PAN-like domain 363 420 IPR003609 -
Gabi251g00013 840 SUPERFAMILY Hairpin loop containing domain-like 365 422 - -
Gabi251g00013 840 PANTHER OS07G0415500 PROTEIN 19 787 - -
Gabi251g00013 840 SUPERFAMILY Protein kinase-like (PK-like) 491 808 IPR011009 -
Gabi251g00013 840 Gene3D Transferase(Phosphotransferase) domain 1 580 783 - -
Gabi251g00013 840 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 231 IPR036426 -
Gabi251g00013 840 SMART ntp_6 363 438 IPR003609 -
Gabi251g00013 840 FunFam Serine/threonine-protein kinase 580 783 - -
Gabi251g00013 840 SMART serkin_6 505 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi251g00013 840 Gene3D Phosphorylase Kinase; domain 1 474 579 - -
Gabi251g00013 840 FunFam Serine/threonine-protein kinase 32 163 - -
Gabi251g00013 840 CDD PAN_AP_plant 351 439 - -
Gabi251g00013 840 CDD STKc_IRAK 511 778 - -
Gabi251g00013 840 FunFam Serine/threonine-protein kinase 472 579 - -
Gabi251g00013 840 Gene3D - 35 164 IPR036426 -
Gabi251g00013 840 Pfam D-mannose binding lectin 85 192 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi251g00013 Gabi-Chr251 100222 102929 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi251g00013 462 785 Receptor kinase-like Gene Family AT5G20050 41.389 1.80e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gabi251g00013 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi251g00013 - - gmx:100782119 1263.06