Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi251g00006 ATGGAAGTTACTAATGTTTTGTCATCAAGTAGCTTCACTAAGAGCATGAGAACCATTGTCATCATCTTCCTCCTTTATGTGTGGCTGCTATGTTTTTTCCAACCATGTATTGCAACGGATGTTTTGAAAGTTGGCGACAAGATAACTGGAGATCAAAGGATTGTTTCAGCTGGAAAAAAATTTGTTCTAGGCTTTTTTTCTCCACAGAAAAGCACCAATGGTCTAGAATGTTACATAGGGATATGGTATAACCAATCAGAAAACTTAAACCCGGAAACAGTGGTGTGGGTTGGCAACAGAGACAACCCTGTAGATTCTAGTGGAATTTTTCAAATCGCAAATGATGGGAATCTAGTAGTAAAAGATTCATCTGGACAAATCTATTGGTCCTCTAAACTTGAAGGCTCCTCATCTAGAAACAAGACAATGAAGCTCATGGATTCTGGGAACTTGGTGTTACTAGATGACTTGGGAACGAGTTACCTCTGGCAAAGTTTCCGACACCCAACAGACACATTTCTTCCGGGCATGAAAATGGATGCAAATTTGACGTTGACTTCTTGGAGAAGCGCCGATGACCCTAGAAGTGGGAGCTTCACATTTAAGCTGCCTATAACTGGGGACACTCGAAACTTCATGGTATACAACCAGTCACAACTTTACTGGGCACATGATGGACTCGATTCAGAAGACATGTCCCCAGTAATTAACTTTTTGGATAACTTTACCTTAAACGTTTCGTCGTTCAAGTATCTTAACCAAACGATGTCCTTGAAACAGTATGACTATGGGGTTTCAAGGCTGTTAATGAATTATACAGGGGAGTTTCAGTTTCTGAAGTTGGACAACTTAAAATGGTCAAATATATGCGGGAGACCAGCTGACAAGTGTGACATACATAACTATTGCGGGAGCTTTAGTAGCTGCAACAAAAATAATTGGATTACCTGCAAATGTTTGCCCGGATTCAGTCCAATTTCGAAGGATAATCAGCACCTGGGAGAGCGATTCCAAGGGTGTGTCAGAACATCAACATCATGTACCAACATGAAGTTCCTGACCTTAAAGATGATAAAAGTGGGCAACCCAGACAAAAGATTCTCAACAGTATCAGAAGCAGAATGCAAATCTTTATGCCTTAATAGGTGTCTCAACTCCCAGTGTCAGGCTTATTCATACAATTTGTCTTCTTCATACAATCGTAGTCCCTTAACATGCGGGATTTGGACACGGGATTTACCAACTCTTCAAGAAGAGCAGCATGATGAAGAGCGTGATCTTTCTATCCTGGTCAAGAGTTCAGATATTGCATCAACTCCAAGATCGTGTGAACCTTGCGGCACATATATGATTCCTTATCCCCTAAGCACTGGGCCAAACTGTGGAGACCCCATGTACAACAAGTTCAATTGCGATAACTCAACAGGCCAGGTTAGCTTCATGATGCCGGGAGAAAAATCATACCAAGTTACTTGGATCGATGAACATGCTAGAAGGTTTTCCATCCAAACGAATGATTCATATCACTGTGATTCCATTTCCGGCTATCAAAACGACAAGGTTAATGCTCCATTTAATGTGACTGATTGGTGCTTTAAGGATGATCAAATAGAGATCAGTTGGCTACCAGCACCAGAACCTGCCTGTAGTGAGTATAAAGACTGCAAGAATTGGCTCCATTCAACATGCAACGCAACAAGTGAAGGGCAAAGAAGGTGCCTTTGTGATTCTAACTATCAGTGGAATGCCTCAAATTTAAGCTGTACCCAAGAAGATCCATCAAGAAGCCCTTCAACCAACCGACTGCCATTGATTCTTTCACTAATTCTTGCATGCATGGTTATTCTGGCATGCACTATAGTATTTGCTTATGTGCGGAGAAAGAAAATAGCCCAAAAGCTTGATGGTGTAAGCACTCGAATTCAGGAGAGCTTGTACGATAGTGAAAGACATGTGAAGCATTTGATTGGCTTGGGAAGTTTAGAAGAAAAAGACAGTGAAGGCATTGAAGTACCGTATTATACTTTTCGAAGTATTCTAGCAGCTACAGATAATTTCTCGGATTCAAACAAGCTTGGACAAGGAGGTTATGGGCCTGTCTATAAGGGAAGGTTTCCTAGAGGTCATGACGCCGCTGTGAAGAGACTTTCAAGTGTTTCGGCTCAAGGCTTACAAGAATTCAAAAATGAGGTTGTTTTGATTGCCAAACTTCAACATAGGAACCTTGTTAGACTCAGGGGATACAGCATCAAAGGAGACGAAAAAATCTTAGTCTATGAATACATGCCAAACAAGAGCTTGGACTCATTTATATTTGACCGGACACGAACTTTACTTCTGGATTGGCACATGCGATTTGACATAATTCTAGGCATTGCACGAGGGTTGCTCTATCTTCACCAAGACTCCAGGTTGAGAGTGATTCATAGAGACCTAAAATCAAGCAACATTCTTTTAGATGAGGAGATGAATCCAAAGATTTCAGACTTTGGCCTTGCCAAAATATTTGGGGGAAAAGAGACCGAAGCAAGCACACAGAGAGTAGTGGGAACCTATGGATATATGGCTCCAGAGTATGCCTTGGATGGACTTTTTTCAATCAAATCTGATGTTTTCAGCTTTGGTGTAGTCCTATTAGAGATTCTCAGTGGAAAAAGGAACACAGGATTCTATGAGTCTAAACAAATTTCTAGCCTTTTGGGTTATGCATGGGGATTATGGACAGAGAATAAATTGCTAGATTTAATGGACCCATCTGTGGGTGAATCATGCAATGAAAATCAATTCGTTAAGTGTGCACATATTGGTCTCTTATGCGTACAAGATGACCCAGGTGATCGACCCACCATGGCAAACGTTATGACAATGCTTGACAGTGAAATTGCAACCATCCCAATTCCTACACAACCAACATTTTTTGTGAGGAATCGTCTTTCAAGCACAGCTTCTTCTTCTAGCAAACCAGAAATAAGTCTGCAATTTGATTCCAGTTATGTAGAAGGTCGATAG 3009 0.4104 MEVTNVLSSSSFTKSMRTIVIIFLLYVWLLCFFQPCIATDVLKVGDKITGDQRIVSAGKKFVLGFFSPQKSTNGLECYIGIWYNQSENLNPETVVWVGNRDNPVDSSGIFQIANDGNLVVKDSSGQIYWSSKLEGSSSRNKTMKLMDSGNLVLLDDLGTSYLWQSFRHPTDTFLPGMKMDANLTLTSWRSADDPRSGSFTFKLPITGDTRNFMVYNQSQLYWAHDGLDSEDMSPVINFLDNFTLNVSSFKYLNQTMSLKQYDYGVSRLLMNYTGEFQFLKLDNLKWSNICGRPADKCDIHNYCGSFSSCNKNNWITCKCLPGFSPISKDNQHLGERFQGCVRTSTSCTNMKFLTLKMIKVGNPDKRFSTVSEAECKSLCLNRCLNSQCQAYSYNLSSSYNRSPLTCGIWTRDLPTLQEEQHDEERDLSILVKSSDIASTPRSCEPCGTYMIPYPLSTGPNCGDPMYNKFNCDNSTGQVSFMMPGEKSYQVTWIDEHARRFSIQTNDSYHCDSISGYQNDKVNAPFNVTDWCFKDDQIEISWLPAPEPACSEYKDCKNWLHSTCNATSEGQRRCLCDSNYQWNASNLSCTQEDPSRSPSTNRLPLILSLILACMVILACTIVFAYVRRKKIAQKLDGVSTRIQESLYDSERHVKHLIGLGSLEEKDSEGIEVPYYTFRSILAATDNFSDSNKLGQGGYGPVYKGRFPRGHDAAVKRLSSVSAQGLQEFKNEVVLIAKLQHRNLVRLRGYSIKGDEKILVYEYMPNKSLDSFIFDRTRTLLLDWHMRFDIILGIARGLLYLHQDSRLRVIHRDLKSSNILLDEEMNPKISDFGLAKIFGGKETEASTQRVVGTYGYMAPEYALDGLFSIKSDVFSFGVVLLEILSGKRNTGFYESKQISSLLGYAWGLWTENKLLDLMDPSVGESCNENQFVKCAHIGLLCVQDDPGDRPTMANVMTMLDSEIATIPIPTQPTFFVRNRLSSTASSSSKPEISLQFDSSYVEGR 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi251g00006 1002 ProSiteProfiles PAN/Apple domain profile. 347 434 IPR003609 -
Gabi251g00006 1002 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 651 761 - -
Gabi251g00006 1002 Gene3D Transferase(Phosphotransferase) domain 1 762 964 - -
Gabi251g00006 1002 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 131 981 - -
Gabi251g00006 1002 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 762 965 - -
Gabi251g00006 1002 Gene3D - 36 167 IPR036426 -
Gabi251g00006 1002 Pfam Protein kinase domain 687 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi251g00006 1002 SMART serkin_6 686 961 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi251g00006 1002 Pfam S-locus glycoprotein domain 234 325 IPR000858 GO:0048544
Gabi251g00006 1002 SMART ntp_6 347 431 IPR003609 -
Gabi251g00006 1002 CDD STKc_IRAK 692 958 - -
Gabi251g00006 1002 SMART blect_4 45 169 IPR001480 -
Gabi251g00006 1002 SUPERFAMILY alpha-D-mannose-specific plant lectins 94 194 IPR036426 -
Gabi251g00006 1002 ProSiteProfiles Protein kinase domain profile. 686 972 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi251g00006 1002 CDD B_lectin 48 169 IPR001480 -
Gabi251g00006 1002 Gene3D Phosphorylase Kinase; domain 1 658 761 - -
Gabi251g00006 1002 SUPERFAMILY Protein kinase-like (PK-like) 668 991 IPR011009 -
Gabi251g00006 1002 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Gabi251g00006 1002 Pfam D-mannose binding lectin 93 184 IPR001480 -
Gabi251g00006 1002 ProSiteProfiles Bulb-type lectin domain profile. 39 166 IPR001480 -
Gabi251g00006 1002 FunFam Receptor-like serine/threonine-protein kinase SD1-8 34 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi251g00006 Gabi-Chr251 43560 48421 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi251g00006 676 977 Receptor kinase-like Gene Family AT4G23140 59.416 3.99e-128 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi251g00006 Pkinase 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi251g00006 - - gmx:100807185 1247.26