Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi251g00005 ATGGAAGTTACTAATGTTTTGTCATCAAGTAGCTTCACTAAGAGCATGAGAACCATTGTCATCATCTTCCTCCTTTATGTGTGGCTGCTATGTTTTTTCCAACCATGTATTGCAACGGATGTTTTGAAAGTTGGCGACAAGATAACTGGAGATCAAAGGATTGTTTCAGCTGGAAAAAAATTTGTTCTAGGCTTTTTTTCTCCACAGAAAAGCACCAATGGTCTAGAATGTTACATAGGGATATGGTATAACCAATCAGAAAACTTAAACCCGGAAACAGTGGTGTGGGTTGGCAACAGAGACAACCCTGTAGATTCTAGTGGAATTTTTCAAATCGCAAATGATGGGAATCTAGTAGTAAAAGATTCATCTGGACAAATCTATTGGTCCTCTAAACTTGAAGGCTCCTCATCTAGAAACAAGACAATGAAGCTCATGGATTCTGGGAACTTGGTGTTACTAGATGACTTGGGAACGAGTTACCTCTGGCAAAGTTTCCGACACCCAACAGACACATTTCTTCCGGGCATGAAAATGGATGCAAATTTGACGTTGACTTCTTGGAGAAGCGCCGATGACCCTAGAAGTGGGAGCTTCACATTTAAGCTGCCTATAACTGGGGACACTCGAAACTTCATGGTATACAACCAGTCACAACTTTACTGGGCACATGATGGACTCGATTCAGAAGACATGTCCCCAGTAATTAACTTTTTGGATAACTTTACCTTAAACGTTTCGTCGTTCAAGTATCTTAACCAAACGATGTCCTTGAAACAGTATGACTATGGGGTTTCAAGGCTGTTAATGAATTATACAGGGGAGTTTCAGTTTCTGAAGTTGGACAACTTAAAATGGTCAAATATATGCGGGAGACCAGCTGACAAGTGTGACATACATAACTATTGCGGGAGCTTTAGTAGCTGCAACAAAAATAATTGGATTACCTGCAAATGTTTGCCCGGATTCAGTCCAATTTCGAAGGATAATCAGCACCTGGGAGAGCGATTCCAAGGGTGTGTCAGAACATCAACATCATGTACCAACATGAAGTTCCTGACCTTAAAGATGATAAAAGTGGGCAACCCAGACAAAAGATTCTCAACAGTATCAGAAGCAGAATGCAAATCTTTATGCCTTAATAGGTGTCTCAACTCCCAGTGTCAGGCTTATTCATACAATTTGTCTTCTTCATACAATCGTAGTCCCTTAACATGCGGGATTTGGACACGGGATTTACCAACTCTTCAAGAAGAGCAGCATGATGAAGAGCGTGATCTTTCTATCCTGGTCAAGAGTTCAGATATTGCATCAACTCCAAGATCGTGTGAACCTTGCGGCACATATATGATTCCTTATCCCCTAAGCACTGGGCCAAACTGTGGAGACCCCATGTACAACAAGTTCAATTGCGATAACTCAACAGGCCAGGTTAGCTTCATGATGCCGGGAGAAAAATCATACCAAGTTACTTGGATCGATGAACATGCTAGAAGGTTTTCCATCCAAACGAATGATTCATATCACTGTGATTCCATTTCCGGCTATCAAAACGACAAGGTTAATGCTCCATTTAATGTGACTGATTGGTGCTTTAAGGATGATCAAATAGAGATCAGTTGGCTACCAGCACCAGAACCTGCCTGTAGTGAGTATAAAGACTGCAAGAATTGGCTCCATTCAACATGCAACGCAACAAGTGAAGGGCAAAGAAGGTGCCTTTGTGATTCTAACTATCAGTGGAATGCCTCAAATTTAAGCTGTACCCAAGATGGTGTAAGCACTCGAATTCAGGAGAGCTTGTACGATAGTGAAAGACATGTGAAGCATTTGATTGGCTTGGGAAGTTTAGAAGAAAAAGACAGTGAAGGCATTGAAGTACCGTATTATACTTTTCGAAGTATTCTAGCAGCTACAGATAATTTCTCGGATTCAAACAAGCTTGGACAAGGAGGTTATGGGCCTGTCTATAAGGGAAGGTTTCCTAGAGGTCATGACGCCGCTGTGAAGAGACTTTCAAGTGTTTCGGCTCAAGGCTTACAAGAATTCAAAAATGAGGTTGTTTTGATTGCCAAACTTCAACATAGGAACCTTGTTAGACTCAGGGGATACAGCATCAAAGGAGACGAAAAAATCTTAGTCTATGAATACATGCCAAACAAGAGCTTGGACTCATTTATATTTGACCGGACACGAACTTTACTTCTGGATTGGCACATGCGATTTGACATAATTCTAGGCATTGCACGAGGGTTGCTCTATCTTCACCAAGACTCCAGGTTGAGAGTGATTCATAGAGACCTAAAATCAAGCAACATTCTTTTAGATGAGGAGATGAATCCAAAGATTTCAGACTTTGGCCTTGCCAAAATATTTGGGGGAAAAGAGACCGAAGCAAGCACACAGAGAGTAGTGGGAACCTATGGATATATGGCTCCAGAGTATGCCTTGGATGGACTTTTTTCAATCAAATCTGATGTTTTCAGCTTTGGTGTAGTCCTATTAGAGATTCTCAGTGGAAAAAGGAACACAGGATTCTATGAGTCTAAACAAATTTCTAGCCTTTTGGGTTATGCATGGGGATTATGGACAGAGAATAAATTGCTAGATTTAATGGACCCATCTGTGGGTGAATCATGCAATGAAAATCAATTCGTTAAGTGTGCACATATTGGTCTCTTATGCGTACAAGATGACCCAGGTGATCGACCCACCATGGCAAACGTTATGACAATGCTTGACAGTGAAATTGCAACCATCCCAATTCCTACACAACCAACATTTTTTGTGAGGAATCGTCTTTCAAGCACAGCTTCTTCTTCTAGCAAACCAGAAATAAGTCTGCAATTTGATTCCAGTTATGTAGAAGGTCGATAG 2877 0.4105 MEVTNVLSSSSFTKSMRTIVIIFLLYVWLLCFFQPCIATDVLKVGDKITGDQRIVSAGKKFVLGFFSPQKSTNGLECYIGIWYNQSENLNPETVVWVGNRDNPVDSSGIFQIANDGNLVVKDSSGQIYWSSKLEGSSSRNKTMKLMDSGNLVLLDDLGTSYLWQSFRHPTDTFLPGMKMDANLTLTSWRSADDPRSGSFTFKLPITGDTRNFMVYNQSQLYWAHDGLDSEDMSPVINFLDNFTLNVSSFKYLNQTMSLKQYDYGVSRLLMNYTGEFQFLKLDNLKWSNICGRPADKCDIHNYCGSFSSCNKNNWITCKCLPGFSPISKDNQHLGERFQGCVRTSTSCTNMKFLTLKMIKVGNPDKRFSTVSEAECKSLCLNRCLNSQCQAYSYNLSSSYNRSPLTCGIWTRDLPTLQEEQHDEERDLSILVKSSDIASTPRSCEPCGTYMIPYPLSTGPNCGDPMYNKFNCDNSTGQVSFMMPGEKSYQVTWIDEHARRFSIQTNDSYHCDSISGYQNDKVNAPFNVTDWCFKDDQIEISWLPAPEPACSEYKDCKNWLHSTCNATSEGQRRCLCDSNYQWNASNLSCTQDGVSTRIQESLYDSERHVKHLIGLGSLEEKDSEGIEVPYYTFRSILAATDNFSDSNKLGQGGYGPVYKGRFPRGHDAAVKRLSSVSAQGLQEFKNEVVLIAKLQHRNLVRLRGYSIKGDEKILVYEYMPNKSLDSFIFDRTRTLLLDWHMRFDIILGIARGLLYLHQDSRLRVIHRDLKSSNILLDEEMNPKISDFGLAKIFGGKETEASTQRVVGTYGYMAPEYALDGLFSIKSDVFSFGVVLLEILSGKRNTGFYESKQISSLLGYAWGLWTENKLLDLMDPSVGESCNENQFVKCAHIGLLCVQDDPGDRPTMANVMTMLDSEIATIPIPTQPTFFVRNRLSSTASSSSKPEISLQFDSSYVEGR 958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi251g00005 958 SUPERFAMILY Protein kinase-like (PK-like) 624 947 IPR011009 -
Gabi251g00005 958 Pfam S-locus glycoprotein domain 233 325 IPR000858 GO:0048544
Gabi251g00005 958 SMART serkin_6 642 917 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi251g00005 958 ProSiteProfiles PAN/Apple domain profile. 347 434 IPR003609 -
Gabi251g00005 958 ProSiteProfiles Protein kinase domain profile. 642 928 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi251g00005 958 FunFam Receptor-like serine/threonine-protein kinase SD1-8 34 166 - -
Gabi251g00005 958 CDD STKc_IRAK 648 914 - -
Gabi251g00005 958 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 718 921 - -
Gabi251g00005 958 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 131 937 - -
Gabi251g00005 958 SUPERFAMILY alpha-D-mannose-specific plant lectins 94 194 IPR036426 -
Gabi251g00005 958 SMART ntp_6 347 431 IPR003609 -
Gabi251g00005 958 Gene3D - 36 167 IPR036426 -
Gabi251g00005 958 SMART blect_4 45 169 IPR001480 -
Gabi251g00005 958 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 607 717 - -
Gabi251g00005 958 CDD B_lectin 48 169 IPR001480 -
Gabi251g00005 958 Gene3D Transferase(Phosphotransferase) domain 1 718 920 - -
Gabi251g00005 958 ProSiteProfiles Bulb-type lectin domain profile. 39 166 IPR001480 -
Gabi251g00005 958 ProSitePatterns Serine/Threonine protein kinases active-site signature. 763 775 IPR008271 GO:0004672|GO:0006468
Gabi251g00005 958 Pfam D-mannose binding lectin 93 184 IPR001480 -
Gabi251g00005 958 Pfam Protein kinase domain 643 910 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi251g00005 958 Gene3D Phosphorylase Kinase; domain 1 614 717 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi251g00005 Gabi-Chr251 43560 48421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi251g00005 632 933 Receptor kinase-like Gene Family AT4G23140 59.416 1.55e-128 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi251g00005 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi251g00005 - - vun:114185132 1194.49