Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2519g00022 ATGGGGGATCACTTTAGTTTGTTGGTTGATCGATTGATAACTGAATCCACATTAGAAGCTGCACTTGAAAGCAGAAATCGATCAATGCAGGCTGCATCCTCAGCAGTGAATGATACAGAGGTTGACCTCTCTTCGATGAAGATGGGTCTCGATCATATAAAATATCCGGGGAAACTGGTAGAATGCAGGATATGTCATGATGAGGATGAAGATTCCAATATGGAAACACCCTGCTCCTGTTGTGGTAGTTTGAAGTACGCCCACCGAAGATGTATACAACGGTGGTGTAATGAGAAGGGTGACACCACCTGTGAGATATGCCACCAGCAATTCAAGCCTGGTTATACAGCTCCTCCTCCACTATTTCAATTTGGACGTATTCCAATGAGTTTCAGGGGAAATTGGGAGATTTCAAGAAGAGACTTGAATAGCACTCATTTGGTTAGCATGGTTTCGACCGACCAGAACCTTATCAATTCTAACTATGATCAATATTCAGCCTCTACTCCAGGAAGTTTGATATGCTGTCGTTTGGTTGCTGTCATTTTCATGGTTCTGCTGATTTTAAGACATACTCTTCCCCTTGTAATTAGTGGAAATAAGGATTACTCTTTCCCACTCTTCTTGGTGTTATTATTTCGGTCTGCGGGAATTGTTCTTCCTATATACTTCATGGTTAGAGCAGTGACGTTCATCCAGCGGCATCGGAGACATCTTCGGGAGCATCCCAATGCCTTGGTCAGTTTATCTGACGATGAAAACGAGGAAGCAGCTTTGCAGCCTCATATGATACGTGTTCTGTAA 804 0.4303 MGDHFSLLVDRLITESTLEAALESRNRSMQAASSAVNDTEVDLSSMKMGLDHIKYPGKLVECRICHDEDEDSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQQFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVSTDQNLINSNYDQYSASTPGSLICCRLVAVIFMVLLILRHTLPLVISGNKDYSFPLFLVLLFRSAGIVLPIYFMVRAVTFIQRHRRHLREHPNALVSLSDDENEEAALQPHMIRVL 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2519g00022 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 117 IPR013083 -
Gabi2519g00022 267 ProSiteProfiles Zinc finger RING-type profile. 62 108 IPR001841 -
Gabi2519g00022 267 SMART ringv_2 61 108 IPR011016 GO:0008270
Gabi2519g00022 267 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Gabi2519g00022 267 CDD RING_CH-C4HC3_MARCH 62 108 - -
Gabi2519g00022 267 Pfam Protein of unknown function (DUF3675) 113 229 IPR022143 -
Gabi2519g00022 267 FunFam Zinc finger family protein 51 117 - -
Gabi2519g00022 267 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 238 IPR033275 -
Gabi2519g00022 267 SUPERFAMILY RING/U-box 60 112 - -
Gabi2519g00022 267 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2519g00022 Gabi-Chr2519 236677 240732 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2519g00022 61 108 C3H Transcription Factor Family AT2G37950 49.020 1.11e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2519g00022 - - vun:114190540 466.077