Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2519g00001 TCAAGATCACGATCAAGGTTTAGAACTCATTCCAGGAGTCAAGATTCAGCGGATGCAAGGAATCCCGGAAATAATTTGTATGTAACAGGCTTGTCCACAAGGATTACTTCCAGGGATCTTGAGAAGTATTTCAACAAAGAGGGAAAGGTTGTCGAGTGCCACCTGGTAACAGATCCTCGTTCTAAAAAGTCTCGTGGATATGGTTTTGTCACTATGGAAAGTAATCACGATGCTGAGCGATGTACCAAGTATTTGGACCGCTCTGTTTTTGAAGGTCGACTGACAACTGTGGAAAAGGCCAAGAGAAGTCGTGACAGGACTCCAATTCCTGGCAGATACCGTGGTTCAAGAGATAAGCAAATGGCTGACATGGATGGCGACGATCACGTTATCGATGGCAGCATTGGCAGGACAGATATTATTATTCAAGGGACCGGCGTGGACGATTACTTTGATTAA 459 0.4466 SRSRSRFRTHSRSQDSADARNPGNNLYVTGLSTRITSRDLEKYFNKEGKVVECHLVTDPRSKKSRGYGFVTMESNHDAERCTKYLDRSVFEGRLTTVEKAKRSRDRTPIPGRYRGSRDKQMADMDGDDHVIDGSIGRTDIIIQGTGVDDYFD 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2519g00001 152 SMART rrm1_1 25 98 IPR000504 GO:0003723
Gabi2519g00001 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 93 IPR000504 GO:0003723
Gabi2519g00001 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 102 IPR000504 GO:0003723
Gabi2519g00001 152 MobiDBLite consensus disorder prediction 99 124 - -
Gabi2519g00001 152 Gene3D - 1 134 IPR012677 -
Gabi2519g00001 152 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 19 126 - -
Gabi2519g00001 152 MobiDBLite consensus disorder prediction 1 25 - -
Gabi2519g00001 152 SUPERFAMILY RNA-binding domain, RBD 17 120 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2519g00001 Gabi-Chr2519 6154 8974 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2519g00001 10 106 Eukaryotic Initiation Factors Gene Family AT1G49760 29.897 1.16e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2519g00001 K12897 - qsa:O6P43_021941 187.578