Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi250g00001 CTTTCCGGTGATTTGATGCAAAGTAGTCAGATGGTGACTCAGTTATCCAGCCCATCTTCATATTCTTATGAAAATGATTTTCTCAAGGATACAAAGAGGAAATTTCTTACTGATATTAAGAATTGCATAGATGCTACTACTTGCATTACTTATGGAACTGTAAAATCCATCGAAAGTAAATGCAACTGGTGGTACAAGTCCTGTAAGAAATGTCCATATTCAGTGTGCGAAGATTTTGAGAAATGGTATTGTAAGAACTGTCAAAAACATTGGAATGAATATACTCCGAAGTTCAGTGTTCAAGTCAGAGTTGTTGTTAACACGGATTCTGCTTCTTTCGTACTATTTGATAGAGACTGTCTTTCTTTATTAGGAGTGAGTGCTGCTGAATTGCGCGAGCAACATTTTAAGCGGGGTGCAGATTTAGAACATTATCCGGAAGAGTTGAACGTTCTTAAAGATAGATCTAAGTTGTTTAAAGTGAATGTCAAAATTAGCAATTTGAACTCATACAATGAGCCAAAATATCATGTGGCCAAAGTTTGCATCAGTGAAAGTATTATCACATCATTTCTGAAGACCACGGATGATTCTGTATTTGACAGTCCTTCTGATGATAATATTATGTCGATAGGGTCAGGAAAAGCTGTGGATGTTCAGAGCCAAACCTGTGATAGTACTGATGATGCTGATATTTCTCTCACTTTGTTGTCACCGTTCTTGAATTTTGATGCTGCAGCCGGTGACACTTTGGAGCAGAAAGAAAATCTGTAA 774 0.3708 LSGDLMQSSQMVTQLSSPSSYSYENDFLKDTKRKFLTDIKNCIDATTCITYGTVKSIESKCNWWYKSCKKCPYSVCEDFEKWYCKNCQKHWNEYTPKFSVQVRVVVNTDSASFVLFDRDCLSLLGVSAAELREQHFKRGADLEHYPEELNVLKDRSKLFKVNVKISNLNSYNEPKYHVAKVCISESIITSFLKTTDDSVFDSPSDDNIMSIGSGKAVDVQSQTCDSTDDADISLTLLSPFLNFDAAAGDTLEQKENL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi250g00001 257 Pfam Replication factor-A C terminal domain 50 181 IPR013955 -
Gabi250g00001 257 Gene3D - 21 187 IPR012340 -
Gabi250g00001 257 CDD RPA1_DBD_C 48 181 IPR047192 -
Gabi250g00001 257 SUPERFAMILY Nucleic acid-binding proteins 32 181 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi250g00001 Gabi-Chr250 3696 4993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi250g00001 64 181 Core DNA Replication Machinery Family AT5G61000 27.731 2.52e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi250g00001 - - adu:107466248 151.754