Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2507g00037 ATGGGGAGGGGAAAAGTGCAGTTGAAGAGGATCGAGAACAAGATCAACAGACAGGTGACGTTCTCCAAGAGAAGGTCTGGTTTGCTCAAGAAAGCTCACGAGATCTCTGTGCTTTGCGATTCTGAAGTGGCTCTCATAGTCTTCTCCTCCAAAGGCAAGCTTTTCGAGTTCTCCAGCGACCCTTGTATGGAAAGAATTCTTGAACGTTACGAGAGATATTCGTATACGGAGAGGCAGCTCGTTACAAATGATCAGGCACCAAATGAAAACTGGGTTCTAGAACAGGCAAAGCTCAAGGCTAGGGTGGAAGTCCTAGAGAGAAATCAAAGGAATTTTCAGGGAGAAGATCTGGATAGCTTAAGTCTCAAAGAGCTTCAGAAATTGGAACAACAACTTGGTTCCGCTCTCAAACAAATTAGATCACGAAAGAACCAACTCATGTACGAAACTATTGCAGAGCTTCGGAAAAAGGATAAGGCACTCCAGGAACATAACAACTTGCTCGCCAAGAAGATAAAGGAAAAAGAGAAGGCGCTGGCCCAACAGGAGCAAGTGGGGCTGCAAAATAGTATGGATGTGACCTCCGTCCTTGTAATTCAACCATCGGAGTCCTTGACTACAGGAGGCTCACCACAAGCCAGAGATAATGAAGGAACTCCAACGCAAACTCGAGCTAACACCATTCTTCCACCTTGGATGCTTCGTCCTACAAATGAATAG 720 0.4556 MGRGKVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDSEVALIVFSSKGKLFEFSSDPCMERILERYERYSYTERQLVTNDQAPNENWVLEQAKLKARVEVLERNQRNFQGEDLDSLSLKELQKLEQQLGSALKQIRSRKNQLMYETIAELRKKDKALQEHNNLLAKKIKEKEKALAQQEQVGLQNSMDVTSVLVIQPSESLTTGGSPQARDNEGTPTQTRANTILPPWMLRPTNE 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2507g00037 239 MobiDBLite consensus disorder prediction 201 239 - -
Gabi2507g00037 239 Coils Coil 122 145 - -
Gabi2507g00037 239 Coils Coil 88 115 - -
Gabi2507g00037 239 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Gabi2507g00037 239 Coils Coil 161 185 - -
Gabi2507g00037 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 170 - -
Gabi2507g00037 239 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gabi2507g00037 239 MobiDBLite consensus disorder prediction 201 228 - -
Gabi2507g00037 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gabi2507g00037 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gabi2507g00037 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gabi2507g00037 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gabi2507g00037 239 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Gabi2507g00037 239 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677|GO:0046983
Gabi2507g00037 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gabi2507g00037 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gabi2507g00037 239 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Gabi2507g00037 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gabi2507g00037 239 Pfam K-box region 83 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2507g00037 Gabi-Chr2507 338683 347093 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2507g00037 1 179 MADS-box Gene Family AT1G26310 66.851 6.51e-84 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gabi2507g00037 K-box 2.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2507g00037 K09264 K09260 gmx:100805348 335.109