Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2507g00035 ATGGAATCTTGGAGCTATGTTTCTGAAGAAAAGGGTTATGTTTCCAACGAGACACTCTCGCCTCCCAATAGTATTGGGAGAACCAAAAATTCATTCTTGGGTTGGGAACTGAAAACCCCATGTAGTTTTTCCAATGACATGTTAGCCTTGGGGCAGCAAAACATTGAGAACCAAGGTCTTGAGGAATTGGGTTTTCCTGAAATGTTGGGGAAACAATTGTCTGATGATCTTCTTGGCAGTGTTCCAAGCAGAAAACTTGATAGTAGAATCACAAGCACTGTTGTGGCTGCCCCAAATGCAATTTCTTCGAGAGGGGACTCCAATTCCAAGCTTTCAAACTCTGTGGTGGACTCTAACGGAAGGGATTCCCTCATTGATTTGAAGCTAGGAAGATTTGCTGATCATGGAGATGCTAATGATCCAGCATTTTCCAAAGGAACACCCATTTTGTCGTCTTCTGAGTCATCAACGCCCCCCAAGAGAGTGCGAGCTTCAGGTTTGCACTCACAGACTGCTTACTGCCAAGTCTATGGCTGTAACAAGGACCTTAGCTCCTGTAAAGATTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTGCCACGGTTATAGTGAATGGCATTGAGCAGAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGGAAACGCCTTGCAGGCCATAACGAGCGTCGAAGAAAACCACAATTGAATACTCACTCTGGAAAGTCCGGGAGGTTGCTTCAGCCATGTGGTGATAGCAGATTCCAGGGAACCGTGCTAACATCAACATCTTTTATCTGCCCAGAGATGCTCCCTAGTGCAGTCATGCGTTCAGAGAAATATGGAATGAGTGGCTTCTGGAGACCTATAAAAGCAGAACAAGCAACTGGTTTTAGGCATCTTTCTTCTATGCCTACCACCAATGTACATCCTCAGTCAAGGTCTTTATTTCCTTCATATAACGAAAAACAATTTCCCTTTCTTCATGAAAATGGTGCTACATCCACTACAGGAAGCATCTTCTGTGAAAACAATAGCCAATATCCTCCTGCCCTTGGGGCCCAAAATTCTGGGTCACGATCACTATTCCAGGATACCTCCTTAGTAAGTGAGGACTTCAATGTTTTTGATACAGCATCAACTGTTCATGGATTATCGGGAATTTCGGACTCTTGTGCTCTCTCTCTTCTGTCATCTCAGTCCCAGAACTCTTCGAGCCAATCATCAGGAATTCCCTTGGCTCACCACCCCTTGGTTATTCCAAACAACCATAACCATCACTACAGCATGAGTCAGGTATCTGAAAAGATAGGAATAAGGTCACAGACTTCTTCAAGCCGAGTGTCAGATAGGTTTCCATCAGAATTCAATCCTGCAGATGGAAGTCATCTCAGTCCTGTATTGATATCAGACAATAATGGTATTGTCAACTTTGAAATGGCAGGTGGCGTTTTCCAAGGTTCAGATTTTGTGAATGTGGAAGATTCCTGTGAAGATGGCGCAACCATTGACTTGTTACAATTGTCATCACAGCTTCAGCGAGTTGAGCATCAGAGGCAATCCTTGCAGGTGAAGCAAGAAAATGATTCTTCCTGCACTCTCCGGATTACTTAA 1656 0.4414 MESWSYVSEEKGYVSNETLSPPNSIGRTKNSFLGWELKTPCSFSNDMLALGQQNIENQGLEELGFPEMLGKQLSDDLLGSVPSRKLDSRITSTVVAAPNAISSRGDSNSKLSNSVVDSNGRDSLIDLKLGRFADHGDANDPAFSKGTPILSSSESSTPPKRVRASGLHSQTAYCQVYGCNKDLSSCKDYHKRHKVCEVHSKTATVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQLNTHSGKSGRLLQPCGDSRFQGTVLTSTSFICPEMLPSAVMRSEKYGMSGFWRPIKAEQATGFRHLSSMPTTNVHPQSRSLFPSYNEKQFPFLHENGATSTTGSIFCENNSQYPPALGAQNSGSRSLFQDTSLVSEDFNVFDTASTVHGLSGISDSCALSLLSSQSQNSSSQSSGIPLAHHPLVIPNNHNHHYSMSQVSEKIGIRSQTSSSRVSDRFPSEFNPADGSHLSPVLISDNNGIVNFEMAGGVFQGSDFVNVEDSCEDGATIDLLQLSSQLQRVEHQRQSLQVKQENDSSCTLRIT 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2507g00035 551 Pfam SBP domain 174 247 IPR004333 GO:0003677
Gabi2507g00035 551 Coils Coil 519 539 - -
Gabi2507g00035 551 MobiDBLite consensus disorder prediction 438 466 - -
Gabi2507g00035 551 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 117 537 IPR044817 GO:0003677
Gabi2507g00035 551 MobiDBLite consensus disorder prediction 138 165 - -
Gabi2507g00035 551 SUPERFAMILY SBT domain 172 252 IPR036893 GO:0003677|GO:0005634
Gabi2507g00035 551 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Gabi2507g00035 551 MobiDBLite consensus disorder prediction 419 471 - -
Gabi2507g00035 551 MobiDBLite consensus disorder prediction 145 165 - -
Gabi2507g00035 551 MobiDBLite consensus disorder prediction 239 260 - -
Gabi2507g00035 551 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Gabi2507g00035 551 Gene3D - 165 235 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2507g00035 Gabi-Chr2507 279459 288529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2507g00035 125 290 SBP-box Gene Family AT1G69170 56.024 9.68e-55 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Gabi2507g00035 SBP 4.5e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2507g00035 - - gmx:100817547 859.751