Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2507g00032 ATGAACGCACATGGAAGTGAAAGAGCACCTCTCTTAGAGGCTGAGCGTGGTGGAAGGGGAAAGAGAGATGATGCCTCAGCAGGTCAAGTCTCAGACCTTGAGCATGGTGATGCAGTGCCGGCGGCAAATGTGGGATTCTTTCGGGTGTTTTCACTTGCAAAGCCTGAGGCTGGAAAGTTGGTGATTGGTACCGTGGCTCTGTTGGTTGCTGCCACAACAAGTATCTTAGTTCAAAAATTTGGTGGGAATATAATCGACATTGTCTCAGGGGATCTGCGAACTCCTGAGGATAAAGACAAAGCTTTGAATGCTGTCAAGAGCACCATACTAGAAATCTCTCTTATTGTTGTTATTGGTTCAGTTTGCACAGCACTTCGAGCTTGGCTTTTTTCTTCTGCTAGTGAAAGGGTTGTTGCACGGCTGAGAAAGAATTTGTTCAGTCACCTTGTAAACCAGGAGATAGCCTTCTTTGATGTTACTCGAACTGGGGAACTTTTAAGTAGGCTATCTGAAGATACACAGATCATAAAGAATGCTGCAACTACCAATCTTTCCGAGGCCCTGAGAAACTTATCAACTGCATTTATTGGTCTTAGCTTCATGTTTGCAACATCATGGAAGTTAACATTGTTGGCTTTGGCTGTTGTACCTGTTATTTCTGTTGCTGTTCGTAAATTTGGCCGTTTCCTGCGTGAACTTTCTCATAAAACTCAAGCAGCAGCTGCAGTAGCTTCTTCAATTGCTGAGGAATCCTTTGGTGCAATAAGAACAGTAAGATCTTTTGCCCAAGAATATTATGAAATAACACGCTACTCTGAGAAAGTCGATGAGACACTTAAGCTTGGACTTAAACAAGCTAAAGTTGTTGGACTCTTTTCTGGAGGCCTTAATGCAGCATCTACACTTTCAGTTATTGTAGTTGTTATATATGGAGCTAACTTGACAATCAAGGGTTCCATGTCCTCAGGCGATCTTACATCTTTCATTCTTTATAGTCTCTCGGTGGGATCTTCTATATCTGGTCTGTCAGGGTTGTACACAGTAGTTATGAAAGCTGCAGGTGCTAGCAGAAGAGTATTTCAAATTATGGATCGTGTCTCATCCATGCCTGTGTCGGGAAATGAATGTCCTCTGGGCGATGGAGATGGGGAAGTGGAACTAGATGATGTATGGTTTTCCTATCCATCACGCCCTAATCATCCAGTGCTCAAGGGCATTTCGCTGAAGCTGCAGCCTGGCTCAAAGGTTGCTCTTGTTGGTCCAAGTGGTGGGGGAAAGACTACAATTGCAAACTTAATTGAAAGATTTTATGACCCAACCAAGGGAAAGATTACGCTGAATGGGGTTCCTCTGGTAGAAATATCACACAAGCATTTACACAGAAAGATCAGTATAGTGAGTCAGGAGCCTACACTCTTCAACTGTTCCATAGAGGAGAACATAGCTTATGGATTCGATGGCAAAGTTAACCCTGATGATATAGAAAAAGCAGCTAAAATGGCCAATGCGCACGAATTTGTATCAAAATTCCCAGAAAAATACAAGACCTTTGTTGGAGAGCGCGGGGTGAGGCTTTCAGGAGGGCAGAAACAGAGAATAGCAATTGCTAGAGCCCTGCTTATGGACCCAAAAATTCTCCTTCTGGATGAAGCCACCAGTGCCTTAGATGCTGAAAGCGAATACCTAGTGCAAGATGCCATGGATTCTATCATGAAGGGAAGGACAGTTCTAGTGATTGCTCATAGGTTATCAACTGTGAAAACTGCTGATACTGTTGCAGTTATTTCTGATGGCCAAGTAGTTGAAAGTGGTACACATGATGAACTTCTCAACAAGGATGGTGTGTATACTGCTTTAGTCAGGAGACAACTACAAACAACAACGAAAGCCGAAATCTAG 1899 0.4318 MNAHGSERAPLLEAERGGRGKRDDASAGQVSDLEHGDAVPAANVGFFRVFSLAKPEAGKLVIGTVALLVAATTSILVQKFGGNIIDIVSGDLRTPEDKDKALNAVKSTILEISLIVVIGSVCTALRAWLFSSASERVVARLRKNLFSHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATTNLSEALRNLSTAFIGLSFMFATSWKLTLLALAVVPVISVAVRKFGRFLRELSHKTQAAAAVASSIAEESFGAIRTVRSFAQEYYEITRYSEKVDETLKLGLKQAKVVGLFSGGLNAASTLSVIVVVIYGANLTIKGSMSSGDLTSFILYSLSVGSSISGLSGLYTVVMKAAGASRRVFQIMDRVSSMPVSGNECPLGDGDGEVELDDVWFSYPSRPNHPVLKGISLKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGKITLNGVPLVEISHKHLHRKISIVSQEPTLFNCSIEENIAYGFDGKVNPDDIEKAAKMANAHEFVSKFPEKYKTFVGERGVRLSGGQKQRIAIARALLMDPKILLLDEATSALDAESEYLVQDAMDSIMKGRTVLVIAHRLSTVKTADTVAVISDGQVVESGTHDELLNKDGVYTALVRRQLQTTTKAEI 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2507g00032 632 CDD ABC_6TM_AtABCB27_like 63 359 - -
Gabi2507g00032 632 SMART AAA_5 412 606 IPR003593 GO:0016887
Gabi2507g00032 632 MobiDBLite consensus disorder prediction 9 30 - -
Gabi2507g00032 632 SUPERFAMILY ABC transporter transmembrane region 48 364 IPR036640 GO:0005524|GO:0016020
Gabi2507g00032 632 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Gabi2507g00032 632 MobiDBLite consensus disorder prediction 1 32 - -
Gabi2507g00032 632 ProSitePatterns ABC transporters family signature. 525 539 IPR017871 GO:0005524|GO:0016887
Gabi2507g00032 632 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 61 351 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2507g00032 632 Gene3D ABC transporter type 1, transmembrane domain 112 382 IPR036640 GO:0005524|GO:0016020
Gabi2507g00032 632 FunFam ABC transporter B family member 25 383 625 - -
Gabi2507g00032 632 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 623 IPR027417 -
Gabi2507g00032 632 Gene3D - 383 628 IPR027417 -
Gabi2507g00032 632 Pfam ABC transporter transmembrane region 60 333 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Gabi2507g00032 632 FunFam ABC transporter B family member 25 112 382 - -
Gabi2507g00032 632 PIRSF ABC_prm/ATPase_B 13 632 - -
Gabi2507g00032 632 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 44 626 IPR039421 -
Gabi2507g00032 632 Pfam ABC transporter 403 553 IPR003439 GO:0005524
Gabi2507g00032 632 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 622 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2507g00032 Gabi-Chr2507 235740 241858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2507g00032 46 629 Calmodulin-binding Proteins AT2G36910 34.570 5.02e-95 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2507g00032 - - var:108320153 1077.77