LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2507g00029	ATGGCTGCAAAACTCCTACATTCTTTAGCAGATGATAACCCAGATTTACAGAAGCAGATAGGATGCATGACTGGGATTTTTCAACTCTTTGATCGTCATCATATTGTTACTGCTCGCCAAATTAGCCTCATTGTAGGCAATTCCCACTACAATTATGACAGCCTGGAAAGAGATTCTAATAGCATACGCCAACGACGTACAGCAGCTGATACAAGCTTAAACAAGGGTGTGAGTGAAAAACAAAGAATTTCAACAGAATCATCAAGAGCCTCGTTCTCTTCTTCTTGTTCATCATCAATGTCCTCTCTGGATTGTAAAGCTCAAGCAGATACTCCCTTAGACCGGATTATTTTTCCTGAAACTCCAATGAGGGACCAAGTTATGAACCAATCAAGTACCTCTCCCCATTTAGGGCGTCACTCCCTTGACCTGAGGGATGTGGTGAGGGACTCAATGTATAGGGAGGCTAGAGGACTATCCAAAGAGGAAGCTGCCATTGGTGTTATAAAGCACATGGACTCCCCAAGACCTCTTCAGCTGTCCAAATCTGTGGATAGAAAACTAAGTGTGCCTGTTGATTTAGAGGAGTCTCTCAGACTCCGACTTCTTGCTAAACTTAGGGAAGCACCTTGGCATTATGATGAAGAAGTTAAAGAACTTGCAAGATTATCATATGAAGTGAAAGATGGACATTGGCATTCCACATCAAAGGATGCTCGTCGGTTTTCTTATGATGGAAGAGAAATAAGTCGTTTATCTTTTGAATCACTTGATACCACCAAATTTCCACCAAAGCTAAAAGAGCTTCCTAGACTTTCACTTGACAGTAGGGAAAGTTCATGGCGCACATTCAGCTCTGATTCAAAACACAGTCACCTCTCGAGAAATTTGAACACTGGTGGTACCTCCACCTCAGATAACAAAGTCTCTAGTCTACAACAGTCTTCAGCAACTCAGAGCCGGTCACCTAGTGTTGTAGCAAAATTAATGGGCTTGGAAGCATTGCCAGAGTCTTATTTGGCTAGTGATAATCAGTCAAGTGTGAGTGAAACTGGCTCAACTCAAAGTAATGCTCAGTTTTCAAAAAATGGACTCACCGGGCCACTCCGAGTTTCCAATTCTCCTAAAAGTTCATTGAAAGACCCAAGTCCCCCGCAGTGGAAGAATCCTGATTTGGTTGTTAAACCTTTCTCAAGTTCAAGGTTTCCCATTGAACCAGCACCATGGAAGCAGCAGGATGGAAACCGAAGCTCTCAGAAACCAAATTCCAGGTCCATAAAAGCTCCACCGAGAACACCAGATTCATTTCCTTCAGTTTATAGTGAGATTGAGAAGAGATTGAAGGATCTTGAATTTAAACAGTCTGGAAGGGATCTTAGAGCACTCAAACGGATACTAGAAGCAATGCAAGTAAAGGGGCTGTTAGAGACAAGAAAAGAAGAACAAGCTTCAAATGTTGTTTCAAATCAAAGAGACTATGAACCAAAAATGAGTCTAGTTCAGAATTCTCTGTCGGTAAGGAAACATAAAATCAGGGGAACTGACTCAGCAAGGACTTTTGAATCACCAATTGTGATCATGAAACCAGCAAAACTTGTTGAGAAAGCTGGAATTTCGGCTTCTTCAGTCATTCCAACTGTTGGAGTTTCTGATTACCATAAACTCCAGAGTGGTGGTGTACATGCACATAATAAAAGAGGGACAGCTTCTGGTCGAATAGCAAAAGATCAGTCTCCTAGAAACAATCGCAGGGATGCTTCTACCAGTTCCAGTGATAAGAAAGCTGGTAGTAGCAAGACTATAAAATCAACACAATCTCAACCAAGGTCTCAGCAATTTCCAAAAGATAATAGCCCAAGTTCAGTAAAGAATTCAGGATCTGTGAGCCCAAGAATGCAGCAGAAGTTAGAGTTGGAGAGGAGATCTCGACCACCTACCCCTCCATCAGGTTCAAATAAAACCAGAAGGCAATCCAGTAAGCAGACAACAGAATCAAGTTCTCCTGTTCGAAAACTGAGACCTAAAGTCCATAATTCACAGCACAGTGATGACCAACTTAGTGACATAAGCAATGAATCAAGAAGTTTAAGTTGCCAAGGTGATGAAATATCTCTGCAATCAGACAGTATCTCAGTTGACTCAAAGATGGATATGGAAGTCACCAGCAGTTTACAATCTGCTGAAATTATTGATAGCCAAAGCCCATCCATGAAGGGTATTGAGCAATTGGTTTCAGGATCAATGAAGAAGAAATCAACTCTGGGATTGGATGAGGATGAGCCGATTGTTGAACTTGCAGCAAATGGCCCAGATCATCCAAGTTGTGTTTCAGTATTTGATATCTCAGTATACAGAGATGATGTGCCATCCCCTGTAAAGCTTATATGCAATGCTCCCAAAGGCTCTCATGGTCAAGAATCTAAAGAAAACGAAAATATAGATCAGTGGAACCCTGCAGATAGCATTTCAGTTAACAGCACAGGATCTGGAGGGATCAACCGCAAGAAATTGCAAAGCATAGATCACCTTGTTCAGAAGCTTAGACGGCTAAACTCAAATCATGATGAAGCTAGAATCGATTACATAGCTTCCCTTTGTGAAAATACAAATCCAGACCACAGATACATCTCCGAAATACTATTAGCTTCAGGCCTACTACTCAGAGATCTGAGTTCTGAATTGCTGACATTTCAATATCACTCATCAGGTCATCCCATTAACCCTGAGTTATTCCTTGTGTTGGAGCAGACCAAGGTAAGTAGTTTGCTTTCAAAAGAAGAGAGCAGCCTCGGAAAAGTTGCTTTCATGAAGCTAAATGCAGAGAAGTTTCACAGGAAACTCATCTTTGATGCTGTGAATGAGATTCTTGGTGTAAAATTAGGCTCTTCTCCCGAGCCATGGTTGAAGCCTAATGGACTCACCAAGAAAGTCCTCAGTGCACAAAAGCTTCTTAAAGAACTGTGCTTTGAGGTAGAAAAAATTCAATCCAAGAAGCCAGATTGCAGTTTAGAAGATGAAGGGGATGGACTGAAAAGTATTCTATTGGAAGATGTGATGCATGGCTCAGAAAGATGGACAGATTTCCATGGTGAAATACCTGGGGTTGTGTTGGATGTTGAGAGACTGATATTTAAGGACTTAGTTGACGAGATTGTGATTGGTGAAGCAACTAGTTCTCGAGTCAAGTTGGGTAGGCGCAAGAAGCTATTTGGAAAGTAG	3219	0.4157	MAAKLLHSLADDNPDLQKQIGCMTGIFQLFDRHHIVTARQISLIVGNSHYNYDSLERDSNSIRQRRTAADTSLNKGVSEKQRISTESSRASFSSSCSSSMSSLDCKAQADTPLDRIIFPETPMRDQVMNQSSTSPHLGRHSLDLRDVVRDSMYREARGLSKEEAAIGVIKHMDSPRPLQLSKSVDRKLSVPVDLEESLRLRLLAKLREAPWHYDEEVKELARLSYEVKDGHWHSTSKDARRFSYDGREISRLSFESLDTTKFPPKLKELPRLSLDSRESSWRTFSSDSKHSHLSRNLNTGGTSTSDNKVSSLQQSSATQSRSPSVVAKLMGLEALPESYLASDNQSSVSETGSTQSNAQFSKNGLTGPLRVSNSPKSSLKDPSPPQWKNPDLVVKPFSSSRFPIEPAPWKQQDGNRSSQKPNSRSIKAPPRTPDSFPSVYSEIEKRLKDLEFKQSGRDLRALKRILEAMQVKGLLETRKEEQASNVVSNQRDYEPKMSLVQNSLSVRKHKIRGTDSARTFESPIVIMKPAKLVEKAGISASSVIPTVGVSDYHKLQSGGVHAHNKRGTASGRIAKDQSPRNNRRDASTSSSDKKAGSSKTIKSTQSQPRSQQFPKDNSPSSVKNSGSVSPRMQQKLELERRSRPPTPPSGSNKTRRQSSKQTTESSSPVRKLRPKVHNSQHSDDQLSDISNESRSLSCQGDEISLQSDSISVDSKMDMEVTSSLQSAEIIDSQSPSMKGIEQLVSGSMKKKSTLGLDEDEPIVELAANGPDHPSCVSVFDISVYRDDVPSPVKLICNAPKGSHGQESKENENIDQWNPADSISVNSTGSGGINRKKLQSIDHLVQKLRRLNSNHDEARIDYIASLCENTNPDHRYISEILLASGLLLRDLSSELLTFQYHSSGHPINPELFLVLEQTKVSSLLSKEESSLGKVAFMKLNAEKFHRKLIFDAVNEILGVKLGSSPEPWLKPNGLTKKVLSAQKLLKELCFEVEKIQSKKPDCSLEDEGDGLKSILLEDVMHGSERWTDFHGEIPGVVLDVERLIFKDLVDEIVIGEATSSRVKLGRRKKLFGK	1072

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	284	324	-	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	121	140	-	-
	Gabi2507g00029	1072	Coils	Coil	840	860	-	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	411	429	-	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	290	324	-	-
	Gabi2507g00029	1072	Pfam	DUF761-associated sequence motif	310	339	IPR032795	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	591	632	-	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	683	702	-	-
	Gabi2507g00029	1072	Pfam	Domain of unknown function (DUF4378)	872	1050	IPR025486	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	60	99	-	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	124	138	-	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	799	830	-	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	645	673	-	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	558	702	-	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	811	830	-	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	65	99	-	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	341	438	-	-
	Gabi2507g00029	1072	MobiDBLite	consensus disorder prediction	341	384	-	-
	Gabi2507g00029	1072	PANTHER	LONGIFOLIA PROTEIN	1	1070	IPR033334	GO:0051513

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2507g00029	Gabi-Chr2507	202500	207713	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2507g00029	128	1071	TRM (TON1 Recruiting Motif) Superfamily	AT1G74160	47.590	0.0	658

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2507g00029	-		-	gmx:100787391	1394.02