Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2507g00020 ATGGCGAAATCAGTGAGTCCAGATGCAATTTCAATTTTGTTTGCAAACCCTTCACCCGATTCTTCATCGGATATTCCGGACATCGTCGTCCAAGTTCTCGATCTCAAGCAAAGCGGTAACAGATACATGTTCACTGCTAGTGATGGAAAAAAGAAGCTGAGGGCGATTCTTCCTTCGGATAAGAACTCTGAGGTTCTCTCGGGGAATATTCAGAACCTTGGTCTTATTCGCATCCTCGATTACACTCTCAACGACATACCCACTAAGTCAGAGAAATACCTTATTGTCACGAAATGTGAACCCGTCTCTCCTGCGCTTCAGATGGAGATAAAGAGTGAGGAAACTGGAGTTATTTTGAAGCCTAAGCAAGAGGGTGGAGTGAAGAGTGAAGGTGTTGGTGGGCTTCTTTTGAAGCCGAAGCAGGAAGTGATGGCGAAATCTGCTGCTCAGATTGTGCACGAACATCATGGAAATGTGGCTCCTGCTGCACGAATGGCCATGACGCGCAGGGTGCGTCCTCTTGTTTCCTTGAATCCTTATCAGGGTAATTGGACAATAAAGGTTAGTGTTACGAGCAAAGGGAACATGCGCACTTATAAGAATGCTAGAGGGGAAGGTTGTGTCTTCAATGTGGAGTTGACAGATGAAGATGGTACTCAGATTCAAGCAACCATGTTTAATGATGCTGCTAGGAAGTTTTACGACAAATTTGTTATGGGGAAGGTTTACTACATTTCAAAGGGAGCTTTAAAGGTTGCCAACAAACAGTTCAAAACTGTGCAAAATGATTATGAAATGACACTTAATGAGAATTCTGAGGTGGAAGAGGTGGCCAATGAAGTGAGTTTTGTTCCCGAAACAAAATTCACGTTTGTCCAGATTGATCAGCTGGGCCCTCATGTCAATAAGTCTGACCTTGTGGATGTCGTTGGAGTAGTTCAGAATGTGTCTTCAACAATGAGCATTCGAAGGAAGAGCAACAATGAGAGTATCCCAAAGCGTGACATTACTATTACTGATGAAACTAAGAAGACAGTAGTTGTGTCTTTGTGGAATGAACTCGCAACTAACATAGGGCAAGATTTACTGGACGTTGCTGATACATCTCCAGTCATTGCAATCAAATCCCTAAGGGTTGGGGACTTCCAAGGCGTTTCTTTGTCAACTATCAGCAAAAGTGTAGTTCTGATAAATCCAGACATACCCGAAGCGAAGAAACTCAGATGCTGGTATGATTCTGAAGGTAAGGATGCCGTAATGGCCCCTATAGGCTCTGGTTCAAGTCCGGCATCTAACAATGGAATTAGATCAGTGTACTCCGACCGTGTTTCACTTTCTCACATAACCTCAAACCAGTCCTTGGGGAGTGACAAGCCTGCGTTTTTCAGTATTAGAGGATATGTAAGCTTCATAAAGCCTGAGCAGGCAATGTGGTATCGTGCCTGTAAGACTTGCAACAAGAAAGTTACTGAAAGTATCGGAGCTGGGTACTGGTGCGAGGGTTGCCAGAAAAACGATGAACATTGCAATTTAAGGTATATTATGGTTGTTAAAGTTTCTGATGCAAGTGGTGAGGCTTTTGTCTCAGTCTTCAATGAAGAAGCTGGGAAAATCGTTGGGTGCTCTGCTGAGGAGCTAGATAACCTTAAGTCACAGTGGGGAGAAGATAATCCTTATCAACTGAAATTAAAACAAGCAACTTGGGTTCCGCATCTTTTCCGGGTTAGTGTTTCCCAGAATGAGTATAATAACGAGAAGCGGCAAAGGATAACTGCCCGGGCAGTTGTTCCTGTTGACTTTGCTGCTGAGTCAAGAATTCTCCTTGAAGATATATCAAAGATGATGGTTTCTCACTAA 1857 0.434 MAKSVSPDAISILFANPSPDSSSDIPDIVVQVLDLKQSGNRYMFTASDGKKKLRAILPSDKNSEVLSGNIQNLGLIRILDYTLNDIPTKSEKYLIVTKCEPVSPALQMEIKSEETGVILKPKQEGGVKSEGVGGLLLKPKQEVMAKSAAQIVHEHHGNVAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGNMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDKFVMGKVYYISKGALKVANKQFKTVQNDYEMTLNENSEVEEVANEVSFVPETKFTFVQIDQLGPHVNKSDLVDVVGVVQNVSSTMSIRRKSNNESIPKRDITITDETKKTVVVSLWNELATNIGQDLLDVADTSPVIAIKSLRVGDFQGVSLSTISKSVVLINPDIPEAKKLRCWYDSEGKDAVMAPIGSGSSPASNNGIRSVYSDRVSLSHITSNQSLGSDKPAFFSIRGYVSFIKPEQAMWYRACKTCNKKVTESIGAGYWCEGCQKNDEHCNLRYIMVVKVSDASGEAFVSVFNEEAGKIVGCSAEELDNLKSQWGEDNPYQLKLKQATWVPHLFRVSVSQNEYNNEKRQRITARAVVPVDFAAESRILLEDISKMMVSH 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2507g00020 618 CDD RPA1_DBD_C 448 613 IPR047192 -
Gabi2507g00020 618 FunFam Replication protein A subunit 170 279 - -
Gabi2507g00020 618 CDD RPA1_DBD_A 173 276 - -
Gabi2507g00020 618 Pfam OB-fold nucleic acid binding domain 184 270 IPR004365 GO:0003676
Gabi2507g00020 618 Gene3D - 4 112 IPR012340 -
Gabi2507g00020 618 Pfam Replication factor-A protein 1, N-terminal domain 5 102 IPR007199 GO:0003677|GO:0005634|GO:0006260
Gabi2507g00020 618 NCBIfam replication factor-a protein 1 (rpa1) 3 613 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi2507g00020 618 FunFam Replication protein A subunit 427 614 - -
Gabi2507g00020 618 Pfam Replication protein A OB domain 300 398 IPR031657 -
Gabi2507g00020 618 CDD RPA1_DBD_B 317 412 - -
Gabi2507g00020 618 PANTHER REPLICATION FACTOR A 1, RFA1 184 577 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi2507g00020 618 Pfam Replication factor-A C terminal domain 461 606 IPR013955 -
Gabi2507g00020 618 Gene3D - 170 279 IPR012340 -
Gabi2507g00020 618 Gene3D - 284 422 IPR012340 -
Gabi2507g00020 618 Gene3D - 424 615 IPR012340 -
Gabi2507g00020 618 FunFam Replication protein A subunit 283 422 - -
Gabi2507g00020 618 SUPERFAMILY Nucleic acid-binding proteins 172 280 IPR012340 -
Gabi2507g00020 618 SUPERFAMILY Nucleic acid-binding proteins 289 416 IPR012340 -
Gabi2507g00020 618 SUPERFAMILY Nucleic acid-binding proteins 440 615 IPR012340 -
Gabi2507g00020 618 FunFam Replication protein A subunit 4 114 - -
Gabi2507g00020 618 SUPERFAMILY Nucleic acid-binding proteins 1 106 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2507g00020 Gabi-Chr2507 123655 126676 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2507g00020 1 618 Core DNA Replication Machinery Family AT5G08020 68.659 0.0 895
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2507g00020 K07466 - qsa:O6P43_002222 979.548