Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2507g00017 ATGATATGCTGTAGAGAATATATAACAATTAACGTTTATGGTTTCCTTCGGGTTACAGCAATGGCTTTCTTTGGTAGACTTGGGAATATACTAAGAAATGCAGCAAATAGGCGGATTAGTCCAGAGTTACGTTCATCCCCATCTGTTTTCCAGGCTATACGCTGTATGTGCTCTGCTCCAAGTTCAAAGCTGTTTATAGGAGGTGTTTCATATTCTACTGATGAGCAGAGTTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATTATGGATAGAGAAAGTGGGAGATCCAGAGGATTTGGCTTTATTACTTACAATTCAGTTGAGGAGGCTGCAAGTGCCATTCAAGCCTTGGATGGTCAGGATCTTCATGGTCGCCGGGTTAGGGTAAATTATGCTAATGATAGACCTCGTGGATATGGAGGCGGTTTTGGTGGTTCTTATGGCAACACACAATATGGTGCTGGAGCTGGTGCTGGCTATGCAGGTGCTTATGGTAGCTCTCCATATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCTATGGTGGGAATGTTGGTGGAGGTTATGGTGGTGGTGGATATGGTGGAGGTGGCTATGGATCAGGTGGCAATTATGGGGGCAGTGGCTCTGCCAATGACTATGCTGCTGACAGTGCTGGTGGGAGTGGAATGAATTATGGGAATGATGGTAAGTTTGCAAGTGGAAACACTTACACCGATGGAAGTAGTGGAGGCTATGGTGGTAACGGTGGGAATTTTGGTGATGCTGGTGGTGTAGGCAAATATGAAAGCTCTGCTGGTTTCCCTAGCAGTGATAATTATGGCAGTGCTGGTGGGGGTGGCAGCTATGGTTTTCCTAGTAGTGGACATGATGGAAGTTCTGTGGATGGCAGTGGTGGTACAGGTACTGGTGGATATGATGGAAGTGCAGGATCGGAATATGCCAGCAGCGGCCAATTTGATACCAAAGAAAGCAGCAATGTGGATGAGGATTTGGGAGGTTTTGGTGACTCGTTGGAAGGAAATTACAAGGACGACGATGATGATACTGATAATTTTGCCAAAAGGGCTTGA 1089 0.4628 MICCREYITINVYGFLRVTAMAFFGRLGNILRNAANRRISPELRSSPSVFQAIRCMCSAPSSKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRESGRSRGFGFITYNSVEEAASAIQALDGQDLHGRRVRVNYANDRPRGYGGGFGGSYGNTQYGAGAGAGYAGAYGSSPYGGGGGGGGGGYGGNVGGGYGGGGYGGGGYGSGGNYGGSGSANDYAADSAGGSGMNYGNDGKFASGNTYTDGSSGGYGGNGGNFGDAGGVGKYESSAGFPSSDNYGSAGGGGSYGFPSSGHDGSSVDGSGGTGTGGYDGSAGSEYASSGQFDTKESSNVDEDLGGFGDSLEGNYKDDDDDTDNFAKRA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2507g00017 362 SMART rrm1_1 63 136 IPR000504 GO:0003723
Gabi2507g00017 362 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 32 166 - -
Gabi2507g00017 362 MobiDBLite consensus disorder prediction 278 362 - -
Gabi2507g00017 362 PRINTS Eggshell protein signature 176 191 - -
Gabi2507g00017 362 PRINTS Eggshell protein signature 245 263 - -
Gabi2507g00017 362 PRINTS Eggshell protein signature 204 214 - -
Gabi2507g00017 362 PRINTS Eggshell protein signature 58 74 - -
Gabi2507g00017 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Gabi2507g00017 362 SUPERFAMILY RNA-binding domain, RBD 58 151 IPR035979 GO:0003676
Gabi2507g00017 362 Gene3D - 57 161 IPR012677 -
Gabi2507g00017 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 134 IPR000504 GO:0003723
Gabi2507g00017 362 CDD RRM2_NsCP33_like 63 138 - -
Gabi2507g00017 362 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 23 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2507g00017 Gabi-Chr2507 109208 112275 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2507g00017 59 177 Eukaryotic Initiation Factors Gene Family AT2G36660 28.800 1.20e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2507g00017 K12741 - gmx:100782808 258.84