Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2507g00016 ATGATATGCTGTAGAGAATATATAACAATTAACGTTTATGGTTTCCTTCGGGTTACAGCAATGGCTTTCTTTGGTAGACTTGGGAATATACTAAGAAATGCAGCAAATAGGCGGATTAGTCCAGAGTTACGTTCATCCCCATCTGTTTTCCAGGCTATACGCTGTATGTGCTCTGCTCCAAGTTCAAAGCTGTTTATAGGAGGTGTTTCATATTCTACTGATGAGCAGAGTTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATTATGGATAGAGAAAGTGGGAGATCCAGAGGATTTGGCTTTATTACTTACAATTCAGTTGAGGAGGCTGCAAGTGCCATTCAAGCCTTGGATGGTCAGGATCTTCATGGTCGCCGGGTTAGGGTAAATTATGCTAATGATAGACCTCGTGGATATGGAGGCGGTTTTGGTGGTTCTTATGGTGGTGGCGGCGGCGGCTATGGTGGGAATGTTGGTGGAGGTTATGGTGGTGGTGGATATGGTGGAGGTGGCTATGGATCAGGTGGCAATTATGGGGGCAGTGGCTCTGCCAATGACTATGCTGCTGACAGTGCTGGTGGGAGTGGAATGAATTATGGGAATGATGGTAAGTTTGCAAGTGGAAACACTTACACCGATGGAAGTAGTGGAGGCTATGGTGGTAACGGTGGGAATTTTGGTGATGCTGGTGGTGTAGGCAAATATGAAAGCTCTGCTGGTTTCCCTAGCAGTGATAATTATGGCAGTGCTGGTGGGGGTGGCAGCTATGGTTTTCCTAGTAGTGGACATGATGGAAGTTCTGTGGATGGCAGTGGTGGTACAGGTACTGGTGGATATGATGGAAGTGCAGGATCGGAATATGCCAGCAGCGGCCAATTTGATACCAAAGAAAGCAGCAATGTGGATGAGGATTTGGGAGGTTTTGGTGACTCGTTGGAAGGAAATTACAAGGACGACGATGATGATACTGATAATTTTGCCAAAAGGGCTTGA 1011 0.457 MICCREYITINVYGFLRVTAMAFFGRLGNILRNAANRRISPELRSSPSVFQAIRCMCSAPSSKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRESGRSRGFGFITYNSVEEAASAIQALDGQDLHGRRVRVNYANDRPRGYGGGFGGSYGGGGGGYGGNVGGGYGGGGYGGGGYGSGGNYGGSGSANDYAADSAGGSGMNYGNDGKFASGNTYTDGSSGGYGGNGGNFGDAGGVGKYESSAGFPSSDNYGSAGGGGSYGFPSSGHDGSSVDGSGGTGTGGYDGSAGSEYASSGQFDTKESSNVDEDLGGFGDSLEGNYKDDDDDTDNFAKRA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2507g00016 336 SMART rrm1_1 63 136 IPR000504 GO:0003723
Gabi2507g00016 336 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 134 IPR000504 GO:0003723
Gabi2507g00016 336 Gene3D - 57 185 IPR012677 -
Gabi2507g00016 336 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Gabi2507g00016 336 PRINTS Eggshell protein signature 219 237 - -
Gabi2507g00016 336 PRINTS Eggshell protein signature 173 183 - -
Gabi2507g00016 336 PRINTS Eggshell protein signature 146 161 - -
Gabi2507g00016 336 PRINTS Eggshell protein signature 58 74 - -
Gabi2507g00016 336 MobiDBLite consensus disorder prediction 264 336 - -
Gabi2507g00016 336 SUPERFAMILY RNA-binding domain, RBD 59 172 IPR035979 GO:0003676
Gabi2507g00016 336 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 32 160 - -
Gabi2507g00016 336 CDD RRM2_NsCP33_like 63 138 - -
Gabi2507g00016 336 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 23 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2507g00016 Gabi-Chr2507 109208 112277 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2507g00016 59 263 Eukaryotic Initiation Factors Gene Family AT2G36660 23.585 5.53e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2507g00016 K12741 - gmx:100782808 260.766