Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2507g00013 ATGGCTTTCTTTGGTAGACTTGGGAATATACTAAGAAATGCAGCAAATAGGCGGATTAGTCCAGAGTTACGTTCATCCCCATCTGTTTTCCAGGCTATACGCTGTATGTGCTCTGCTCCAAGTTCAAAGCTGTTTATAGGAGGTGTTTCATATTCTACTGATGAGCAGAGTTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATAATTATGGATAGAGAAAGTGGGAGATCCAGAGGATTTGGCTTTATTACTTACAATTCAGTTGAGGAGGCTGCAAGTGCCATTCAAGCCTTGGATGGTCAGGATCTTCATGGTCGCCGGGTTAGGGTAAATTATGCTAATGATAGACCTCGTGGATATGGAGGCGGTTTTGGTGGTTCTTATGGCAACACACAATATGGTGCTGGAGCTGGTGCTGGCTATGCAGGTGCTTATGGTAGCTCTCCATATGGTGGTGGTGGTGGTGGTGGCGGCGGCGGCTATGGTGGGAATGTTGGTGGAGGTTATGGTGGTGGTGGATATGGTGGAGGTGGCTATGGATCAGGTGGCAATTATGGGGGCAGTGGCTCTGCCAATGACTATGCTGCTGACAGTGCTGGTGGGAGTGGAATGAATTATGGGAATGATGGTAAGTTTGCAAGTGGAAACACTTACACCGATGGAAGTAGTGGAGGCTATGGTGGTAACGGTGGGAATTTTGGTGATGCTGGTGGTGTAGGCAAATATGAAAGCTCTGCTGGTTTCCCTAGCAGTGATAATTATGGCAGTGCTGGTGGGGGTGGCAGCTATGGTTTTCCTAGTAGTGGACATGATGGAAGTTCTGTGGATGGCAGTGGTGGTACAGGTACTGGTGGATATGATGGAAGTGCAGGATCGGAATATGCCAGCAGCGGCCAATTTGATACCAAAGAAAGCAGCAATGTGGATGAGGATTTGGGAGGTTTTGGTGACTCGTTGGAAGGAAATTACAAGGACGACGATGATGATACTGATAATTTTGCCAAAAGGGCTTGA 1029 0.4704 MAFFGRLGNILRNAANRRISPELRSSPSVFQAIRCMCSAPSSKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRESGRSRGFGFITYNSVEEAASAIQALDGQDLHGRRVRVNYANDRPRGYGGGFGGSYGNTQYGAGAGAGYAGAYGSSPYGGGGGGGGGGYGGNVGGGYGGGGYGGGGYGSGGNYGGSGSANDYAADSAGGSGMNYGNDGKFASGNTYTDGSSGGYGGNGGNFGDAGGVGKYESSAGFPSSDNYGSAGGGGSYGFPSSGHDGSSVDGSGGTGTGGYDGSAGSEYASSGQFDTKESSNVDEDLGGFGDSLEGNYKDDDDDTDNFAKRA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2507g00013 342 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Gabi2507g00013 342 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Gabi2507g00013 342 PRINTS Eggshell protein signature 225 243 - -
Gabi2507g00013 342 PRINTS Eggshell protein signature 184 194 - -
Gabi2507g00013 342 PRINTS Eggshell protein signature 38 54 - -
Gabi2507g00013 342 PRINTS Eggshell protein signature 156 171 - -
Gabi2507g00013 342 SMART rrm1_1 43 116 IPR000504 GO:0003723
Gabi2507g00013 342 SUPERFAMILY RNA-binding domain, RBD 38 131 IPR035979 GO:0003676
Gabi2507g00013 342 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 4 208 - -
Gabi2507g00013 342 Gene3D - 37 141 IPR012677 -
Gabi2507g00013 342 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 146 - -
Gabi2507g00013 342 CDD RRM2_NsCP33_like 43 118 - -
Gabi2507g00013 342 MobiDBLite consensus disorder prediction 256 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2507g00013 Gabi-Chr2507 109208 112386 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2507g00013 39 157 Eukaryotic Initiation Factors Gene Family AT2G36660 28.800 7.87e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2507g00013 K12741 - gmx:100782808 258.84