Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2507g00009 ATGGCGTCGGCGAAGCGATGCCACTACGAAGTCCTTGGTATCCCCCAAGACTGCAGCCCCGACGAGATCCGATCGGCTTACCGGCGGCTCGCCCTGCAGCGCCACCCGGACAAGCTCGTCAAATCTGGCCTCTCCCAAGCCGAAGCTACGGCTCAGTTCCAGGAGCTGCAACACGCCTACGAAGTACTCTCCGATCCTAAGGAACGAGCTTGGTACGATTCCCACCGTTCCCAGATCCTCTTCTCCGATCCCAACTCGCTCGGTAACTCGGTCGTCCCTGACCTCTTCTCCTTCTTCTCGAACACCGTCTATTCCGGTTACTCAGATTCCGGCAAGGGTTTCTACAAGGTTTACTCCGACGTGTTTGACAAAATCCACGCCAATGAAATCAATTTTGCTAAGAAATTGGGTATCGGTGTTGATGCGGTTCGACAAGCCCCTCTTATGGGAAATTTGGATAGTCCCTATGCACAGGTCACAGCGTTTTATAGTTATTGGTTGGGGTTTTCTACTGTGATGGATTTTTGCTGGGTCGATGAGTATGATGTTATGGCCGGTCCGAACCGGAAGTCGAGGCGGCTTATGGAGGAAGAGAACAATAAGGTGAGGAGGAAGGCTAAGAGGGAGTATAATGATACTGTGAGGAGGTTGGCTGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGGTTAAGAAGAGTTTGGAGATGGAGAAGAGGAAAGAGGAGGAGAGGGAGAGGAAGAAGAAGTTAGAGAAGGAGAAAAAGGAGAGGGCTATGGCTTATGAAGAGCCTGATTGGGCTAAGGTTGAGGAGGAGGAGGTGGAGGAGGATGAATGGTTTGAGGAGTTGGAGGAGGGAAAGAAGAAGGGGGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAAAACCATGAGCAATCCAAGAAGCATAAGGAGAAAGTTGCGGAGTTCAGGGATTCTCTTGGTGATGAAGAGGATTTAGAAGCAGAGTTGGAAGGAGAAGGAGCAGGGAAGGAGAGATTGGAAAGTGAGGAGGATGGAATTGGGCTGAATGATGATCAATCTGGGGAGACTGATTATGGGGCTGGTGATTTGGAGGAGAGGATTAGAGATGGTCTCAATGTTGCAGAGGGAGAGACTAGAAGTGGGGTTGAACTGAATGATGATGATGATGATGAATTTTTTGATGCCCGGCATGCAAAGGAGGGGGAGGAGGAGGAGGCTGCTGTTTCAGTAGATTTTGATGCTGATGATAAGGATGATGATGAAATTGGTGTTCTTGAGGCAATGTTGGCTGGGCACAAAAACAGAAAACCTAGTGCTTCAGCACACAAGCCCAAGGCTTCAGCAGCTTCATCTCAAATTGAGAATGAGAATGATGGGGTTGGCCCTATGGAATATAACAACCGAAAGAGCGCAAAAAAGAAACGTGGAGCTAAAAAAGAGAAGGATAGAAAAAATTGGGAAGAATCTCCTGTGGCTGCTGCCAGTGGCAGTTATGAAAACATAAACAGTAATGGAAATCATAATTCTAATCCAGAAGAGTCTTGTTCCCAATATGTTGTGGAAAATGAGGATAATGGAAAAGAGAATGAGCAGGTAGGTAGAGATAAGAAGAAGATTTCAAATCATCCAGATGATAAAAAAGGAAATGCAAAGGATACAAAAACCAAAGCAAAAGTTTCATCCAAAGGAAGAAAGGCAAAGGCAACATCAAAGAATCTTGGCAATATTTGTGATGCATGTGGAGAGGATTTTGAGTCAAGGAATCAATTACATAAACATCTGGGAGATTCTGGGCATGCAACAATAAAAAGTCGATAA 1857 0.4593 MASAKRCHYEVLGIPQDCSPDEIRSAYRRLALQRHPDKLVKSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSLGNSVVPDLFSFFSNTVYSGYSDSGKGFYKVYSDVFDKIHANEINFAKKLGIGVDAVRQAPLMGNLDSPYAQVTAFYSYWLGFSTVMDFCWVDEYDVMAGPNRKSRRLMEEENNKVRRKAKREYNDTVRRLADFVKKRDKRVIDMKVKKSLEMEKRKEEERERKKKLEKEKKERAMAYEEPDWAKVEEEEVEEDEWFEELEEGKKKGEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLGDEEDLEAELEGEGAGKERLESEEDGIGLNDDQSGETDYGAGDLEERIRDGLNVAEGETRSGVELNDDDDDEFFDARHAKEGEEEEAAVSVDFDADDKDDDEIGVLEAMLAGHKNRKPSASAHKPKASAASSQIENENDGVGPMEYNNRKSAKKKRGAKKEKDRKNWEESPVAAASGSYENINSNGNHNSNPEESCSQYVVENEDNGKENEQVGRDKKKISNHPDDKKGNAKDTKTKAKVSSKGRKAKATSKNLGNICDACGEDFESRNQLHKHLGDSGHATIKSR 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2507g00009 618 SMART dnaj_3 6 68 IPR001623 -
Gabi2507g00009 618 ProSitePatterns Zinc finger C2H2 type domain signature. 590 612 IPR013087 -
Gabi2507g00009 618 Gene3D DnaJ domain 1 86 IPR036869 -
Gabi2507g00009 618 MobiDBLite consensus disorder prediction 312 331 - -
Gabi2507g00009 618 MobiDBLite consensus disorder prediction 508 535 - -
Gabi2507g00009 618 MobiDBLite consensus disorder prediction 312 582 - -
Gabi2507g00009 618 SUPERFAMILY beta-beta-alpha zinc fingers 290 339 IPR036236 -
Gabi2507g00009 618 Coils Coil 335 355 - -
Gabi2507g00009 618 MobiDBLite consensus disorder prediction 344 358 - -
Gabi2507g00009 618 Coils Coil 234 263 - -
Gabi2507g00009 618 ProSiteProfiles Zinc finger C2H2 type domain profile. 588 617 IPR013087 -
Gabi2507g00009 618 Coils Coil 272 292 - -
Gabi2507g00009 618 Pfam DnaJ domain 8 73 IPR001623 -
Gabi2507g00009 618 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Gabi2507g00009 618 PRINTS DnaJ domain signature 9 27 IPR001623 -
Gabi2507g00009 618 PRINTS DnaJ domain signature 48 68 IPR001623 -
Gabi2507g00009 618 PRINTS DnaJ domain signature 27 42 IPR001623 -
Gabi2507g00009 618 Gene3D Classic Zinc Finger 286 349 - -
Gabi2507g00009 618 ProSiteProfiles Zinc finger C2H2 type domain profile. 297 326 IPR013087 -
Gabi2507g00009 618 MobiDBLite consensus disorder prediction 536 572 - -
Gabi2507g00009 618 SMART ZnF_U1_5 294 328 IPR003604 GO:0003676|GO:0008270
Gabi2507g00009 618 MobiDBLite consensus disorder prediction 419 435 - -
Gabi2507g00009 618 Pfam Zinc-finger double-stranded RNA-binding 297 322 IPR022755 -
Gabi2507g00009 618 SUPERFAMILY Chaperone J-domain 4 92 IPR036869 -
Gabi2507g00009 618 MobiDBLite consensus disorder prediction 372 386 - -
Gabi2507g00009 618 MobiDBLite consensus disorder prediction 404 418 - -
Gabi2507g00009 618 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Gabi2507g00009 618 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Gabi2507g00009 618 CDD DnaJ 7 65 IPR001623 -
Gabi2507g00009 618 SMART c2h2final6 588 612 IPR013087 -
Gabi2507g00009 618 SMART c2h2final6 297 321 IPR013087 -
Gabi2507g00009 618 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 618 IPR044648 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2507g00009 Gabi-Chr2507 76985 79824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2507g00009 3 618 C2H2 Transcription Factor Family AT1G74250 51.824 0.0 538
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2507g00009 DnaJ 4.1e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2507g00009 K09506 - gmx:100788305 865.529