Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2507g00008 ATGGCGTCGGCGAAGCGATGCCACTACGAAGTCCTTGGTATCCCCCAAGACTGCAGCCCCGACGAGATCCGATCGGCTTACCGGCGGCTCGCCCTGCAGCGCCACCCGGACAAGCTCGTCAAATCTGGCCTCTCCCAAGCCGAAGCTACGGCTCAGTTCCAGGAGCTGCAACACGCCTACGAAGTACTCTCCGATCCTAAGGAACGAGCTTGGTACGATTCCCACCGTTCCCAGATCCTCTTCTCCGATCCCAACTCGCTCGGTAACTCGGTCGTCCCTGACCTCTTCTCCTTCTTCTCGAACACCGTCTATTCCGGTTACTCAGATTCCGGCAAGGGTTTCTACAAGGTTTACTCCGACGTGTTTGACAAAATCCACGCCAATGAAATCAATTTTGCTAAGAAATTGGGTATCGGTGTTGATGCGGTTCGACAAGCCCCTCTTATGGGAAATTTGGATAGTCCCTATGCACAGGTCACAGCGTTTTATAGTTATTGGTTGGGGTTTTCTACTGTGATGGATTTTTGCTGGGTCGATGAGTATGATGTTATGGCCGGTCCGAACCGGAAGTCGAGGCGGCTTATGGAGGAAGAGAACAATAAGGTGAGGAGGAAGGCTAAGAGGGAGTATAATGATACTGTGAGGAGGTTGGCTGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGAGGAAGAAGAAGTTAGAGAAGGAGAAAAAGGAGAGGGCTATGGCTTATGAAGAGCCTGATTGGGCTAAGGTTGAGGAGGAGGAGGTGGAGGAGGATGAATGGTTTGAGGAGTTGGAGGAGGGAAAGAAGAAGGGGGAGAAGGAGTTTTATTGTGTGTTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAAAACCATGAGCAATCCAAGAAGCATAAGGAGAAAGTTGCGGAGTTCAGGGATTCTCTTGGTGATGAAGAGGATTTAGAAGCAGAGTTGGAAGGAGAAGGAGCAGGGAAGGAGAGATTGGAAAGTGAGGAGGATGGAATTGGGCTGAATGATGATCAATCTGGGGAGACTGATTATGGGGCTGGTGATTTGGAGGAGAGGATTAGAGATGGTCTCAATGTTGCAGAGGGAGAGACTAGAAGTGGGGTTGAACTGAATGATGATGATGATGATGAATTTTTTGATGCCCGGCATGCAAAGGAGGGGGAGGAGGAGGAGGCTGCTGTTTCAGTAGATTTTGATGCTGATGATAAGGATGATGATGAAATTGGTGTTCTTGAGGCAATGTTGGCTGGGCACAAAAACAGAAAACCTAGTGCTTCAGCACACAAGCCCAAGGCTTCAGCAGCTTCATCTCAAATTGAGAATGAGAATGATGGGGTTGGCCCTATGGAATATAACAACCGAAAGAGCGCAAAAAAGAAACGTGGAGCTAAAAAAGAGAAGGATAGAAAAAATTGGGAAGAATCTCCTGTGGCTGCTGCCAGTGGCAGTTATGAAAACATAAACAGTAATGGAAATCATAATTCTAATCCAGAAGAGTCTTGTTCCCAATATGTTGTGGAAAATGAGGATAATGGAAAAGAGAATGAGCAGGTAGGTAGAGATAAGAAGAAGATTTCAAATCATCCAGATGATAAAAAAGGAAATGCAAAGGATACAAAAACCAAAGCAAAAGTTTCATCCAAAGGAAGAAAGGCAAAGGCAACATCAAAGAATCTTGGCAATATTTGTGATGCATGTGGAGAGGATTTTGAGTCAAGGAATCAATTACATAAACATCTGGGAGATTCTGGGCATGCAACAATAAAAAGTCGATAA 1809 0.4588 MASAKRCHYEVLGIPQDCSPDEIRSAYRRLALQRHPDKLVKSGLSQAEATAQFQELQHAYEVLSDPKERAWYDSHRSQILFSDPNSLGNSVVPDLFSFFSNTVYSGYSDSGKGFYKVYSDVFDKIHANEINFAKKLGIGVDAVRQAPLMGNLDSPYAQVTAFYSYWLGFSTVMDFCWVDEYDVMAGPNRKSRRLMEEENNKVRRKAKREYNDTVRRLADFVKKRDKRVIDMKRKKKLEKEKKERAMAYEEPDWAKVEEEEVEEDEWFEELEEGKKKGEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLGDEEDLEAELEGEGAGKERLESEEDGIGLNDDQSGETDYGAGDLEERIRDGLNVAEGETRSGVELNDDDDDEFFDARHAKEGEEEEAAVSVDFDADDKDDDEIGVLEAMLAGHKNRKPSASAHKPKASAASSQIENENDGVGPMEYNNRKSAKKKRGAKKEKDRKNWEESPVAAASGSYENINSNGNHNSNPEESCSQYVVENEDNGKENEQVGRDKKKISNHPDDKKGNAKDTKTKAKVSSKGRKAKATSKNLGNICDACGEDFESRNQLHKHLGDSGHATIKSR 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2507g00008 602 SMART dnaj_3 6 68 IPR001623 -
Gabi2507g00008 602 MobiDBLite consensus disorder prediction 492 519 - -
Gabi2507g00008 602 MobiDBLite consensus disorder prediction 328 342 - -
Gabi2507g00008 602 MobiDBLite consensus disorder prediction 296 566 - -
Gabi2507g00008 602 SMART c2h2final6 281 305 IPR013087 -
Gabi2507g00008 602 SMART c2h2final6 572 596 IPR013087 -
Gabi2507g00008 602 Coils Coil 319 339 - -
Gabi2507g00008 602 SUPERFAMILY Chaperone J-domain 4 93 IPR036869 -
Gabi2507g00008 602 Coils Coil 256 276 - -
Gabi2507g00008 602 SUPERFAMILY beta-beta-alpha zinc fingers 274 323 IPR036236 -
Gabi2507g00008 602 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 2 602 IPR044648 -
Gabi2507g00008 602 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Gabi2507g00008 602 MobiDBLite consensus disorder prediction 296 315 - -
Gabi2507g00008 602 SMART ZnF_U1_5 278 312 IPR003604 GO:0003676|GO:0008270
Gabi2507g00008 602 ProSitePatterns Zinc finger C2H2 type domain signature. 283 305 IPR013087 -
Gabi2507g00008 602 Pfam DnaJ domain 8 73 IPR001623 -
Gabi2507g00008 602 Pfam Zinc-finger double-stranded RNA-binding 281 306 IPR022755 -
Gabi2507g00008 602 MobiDBLite consensus disorder prediction 520 556 - -
Gabi2507g00008 602 Gene3D Classic Zinc Finger 270 333 - -
Gabi2507g00008 602 MobiDBLite consensus disorder prediction 403 419 - -
Gabi2507g00008 602 ProSiteProfiles Zinc finger C2H2 type domain profile. 572 601 IPR013087 -
Gabi2507g00008 602 MobiDBLite consensus disorder prediction 388 402 - -
Gabi2507g00008 602 MobiDBLite consensus disorder prediction 356 370 - -
Gabi2507g00008 602 ProSiteProfiles dnaJ domain profile. 7 76 IPR001623 -
Gabi2507g00008 602 ProSitePatterns Zinc finger C2H2 type domain signature. 574 596 IPR013087 -
Gabi2507g00008 602 Gene3D DnaJ domain 1 86 IPR036869 -
Gabi2507g00008 602 ProSiteProfiles Zinc finger C2H2 type domain profile. 281 310 IPR013087 -
Gabi2507g00008 602 PRINTS DnaJ domain signature 9 27 IPR001623 -
Gabi2507g00008 602 PRINTS DnaJ domain signature 48 68 IPR001623 -
Gabi2507g00008 602 PRINTS DnaJ domain signature 27 42 IPR001623 -
Gabi2507g00008 602 CDD DnaJ 7 65 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2507g00008 Gabi-Chr2507 76985 79824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2507g00008 3 602 C2H2 Transcription Factor Family AT1G74250 49.696 0.0 530
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2507g00008 DnaJ 4e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2507g00008 K09506 - gmx:100788305 849.351