Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2506g00023 ATGTTATCTAGAACCTTTTTTGCTTTTTTAATCATTGCATTGAGTTGTTTCAGATGGCTGCAATATGCAGAATCCAAACTACCCCAGGAGGAGGTTACTGCTCTTGAAGAAATCACTAGCACGATGGGTGCCACCTATTGGAAGTTTGATAGTGATTCTTGTCAAATTAAAATGGTGGGGTTAACACCAGAGCCACCTCTTGGATTCACTGAATGCAGCATTGGTTGTGATTGCTCTTCTGATAAAAACACCTGTCATGTAGTAAGGATTATTATCAAGGGATACAACCTTCCTGGCATGCTTCCACCTCAATTGGTTAAGCTTCCTTACCTCAGAGAAGTTGATTTTGCTTTAAACTACCTAAATGGTACAATTCCAAAAGAATGGGCTTCAATGAAACTCACCTCAATCTCTCTACTTGTTAATCGTTTATCGGGAGAAATTCCTAAGGAGTTGGGAAGTATTACCACTCTAACATACCTGAACCTTGAAGCAAACCAATTTTCTGGTATTGTTCCCTCTCAACTTGGAAGTCTGTTTGACCTGCAGACTTTGATTTTATCATCCAATAAATTGTCTGGGAACTTACCAGTGACATTTGCTCAGTTACAGAATTTGACAGATTTTAGGATAAATGATAATAATTTCAATGGAAAAATACCTAGCTTCATCCAGAGTTGGAAACTACTTCAAAGACTAGAGATGCATGCAAGTGGGCTGGAGGGACCTATCCCATCAAATATATCTCTTTTGAGTAATTTATCTCAACTGAGGATTAGTGACATAAATAGTCCAAGTCAGGATTTTCCTATTTTAAGCAACATGGCAGGAATGATAAGATTGATTTTGAGAAATTGTAACATTACTGGAGAGCTTCCTAGCTACTTCTGGACAATGAAGAAATTGGAAATGTTGGATGTCAGTTTCAATAAGTTGGTTGGGGAAATACCAGCAACTGTACAAGTGGGGCATCTGAGATTTGTTTTCCTTACTGGCAACATGCTAAGTGGCAATATACCTGACTCAATCTTGATGGATGGAAGCAATGTTGATCTTTCTTACAACAACTTTACGTGGCAAGGACCTGAGCAATCTGCTTGTGGAAATTACCTGAATTTAAACCTAAACTTGTTCCGTAGCTCCTTAGGGATTAATGCTTTACAGGGGATTCTTCCATGCTTAAAGACTTTCAACTGTCCTACATATTCAAGTTGTTTGCATGTTAATTGTGGTGGAAAGGATATAAAGGTGATGGAAAATGATGAAAATATCCTCTATATAGGAGATGGCGATGTGTTTGGAGGTGCTGCTAAATATTTTAATGATTATACAAATCACTGGGGGTTTAGTAGCACGGGAGACTTCATGGATGATGGTGATTTCCAAAATACACGTTACACCAAGTCTTTGTCATCTTCCAGTATGCCTGAATTATACACAACGGCTCGTGTCTCTCCAATTTCGCTTACTTATTTTCACTATTGCTTGGAGAATGGGAAATATACTGTAAATCTTCACTTTGCTGAATTACTATTTACAAATGATAACACATATAGAAGTCTTGGGAAGCGCATATTTGATATCTATGTTCAGGAAAGATTAGTTTGGAAGGATTTTAATATTGAAGATGAAACACATGTTGCTCAGAAACCACGTATAATATCAACATATAATGTCACTGTAACAGACAATATTCTGGAGATTCGATTCTACTGGGCTGGCAAGGGGACTACAAGAATTCCTGTTAGTGGAATTTATGGTCCTCTCATATCAGCTTTCTCTATTGTTTCTGATTCTAAACCTTGTTCAGACCCAAAAGCTGGAAGGCATCATATAGTGGTTGGAGTTGGAGTTGGAGTTGCAGCTCTATGCCTATTCCTTATCATAGTAGGAATCTGTTGGTGGAAAGGCTACATCAAAGGAATAATTAGGAGAGAAAAAGGTATAGAAGAACAAGATTCTCAGACAGGGACATTTACATTAAAACAAATTAGAGCTGCCACTGATGACTTCAATCCTGCTAACAAGATTGGGGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACATGGATAGCAGTCAAACAACTCTCATCAAAGTCCCGGCAGGGAAACCGTGAATTTTTAAATGAGATAGGCATGATATCTTGTGTGCAACACCCTAATCTTGTGAAACTTCATGGATGTTGTGTTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGCAAAATAATAGCCTGGCCAGTGCTTTATCCGGCTCAGAAAATCGGCTTAAACTTGATTGGCCCACAAGGCTTAGGATCTGTATTGGCATAGCAAAAGGTCTTGCTTTTCTTCATGAAGAATCAAGACTCAAGATTGTTCATCGTGACATCAAAGCTACTAATGTGTTACTGGATGGGAATTTAAACCCTAAAATATCAGACTTTGGGTTGGCTAAGCTTGATGATGAGGGGAAGACCCATATCAGCACCCGAGTGGCTGGGACAATAGGATATATGGCACCAGAATATGCATTATGGGGTTACCTGACTTACAAGGCTGATGTTTACAGTTTTGGAGTTGTGGTCTTGGAAGTTGTTAGTGGAAAGAACAATAACGATTACATGCCAAGTGATAATTGTGTTTGCCTTTTAGATATGGCATGTCATCTGCAACGTACTGAAAACTTAATGAAGCTGGTTGATGAAAGGTTGGGATCAGAAGTAAACCCAACTGAAGCCGAAAATTTGATGAAAGTAGCTCTACTGTGCACAAATGCAGCGCCATCACTTAGGCCTACAATGTCTGAGGTTGTGAACATGCTTGAAGGAAGAATAAGCATTCCAGATGTTATCCCAGAACCAAGTGTTTTCAGTGAAGATTTAAGGTTTAAAGCAATGAGGGACATCCATCAACACAAGGAAAGTCACAGTTTAAGCACAAGCCGAACAGACAATTCAACGGGAGTCCCTACACTTAGCTCTCCCTCAATATTTGGCAATGACATAAATGAGATATCCTCAGAACCATAA 3030 0.3894 MLSRTFFAFLIIALSCFRWLQYAESKLPQEEVTALEEITSTMGATYWKFDSDSCQIKMVGLTPEPPLGFTECSIGCDCSSDKNTCHVVRIIIKGYNLPGMLPPQLVKLPYLREVDFALNYLNGTIPKEWASMKLTSISLLVNRLSGEIPKELGSITTLTYLNLEANQFSGIVPSQLGSLFDLQTLILSSNKLSGNLPVTFAQLQNLTDFRINDNNFNGKIPSFIQSWKLLQRLEMHASGLEGPIPSNISLLSNLSQLRISDINSPSQDFPILSNMAGMIRLILRNCNITGELPSYFWTMKKLEMLDVSFNKLVGEIPATVQVGHLRFVFLTGNMLSGNIPDSILMDGSNVDLSYNNFTWQGPEQSACGNYLNLNLNLFRSSLGINALQGILPCLKTFNCPTYSSCLHVNCGGKDIKVMENDENILYIGDGDVFGGAAKYFNDYTNHWGFSSTGDFMDDGDFQNTRYTKSLSSSSMPELYTTARVSPISLTYFHYCLENGKYTVNLHFAELLFTNDNTYRSLGKRIFDIYVQERLVWKDFNIEDETHVAQKPRIISTYNVTVTDNILEIRFYWAGKGTTRIPVSGIYGPLISAFSIVSDSKPCSDPKAGRHHIVVGVGVGVAALCLFLIIVGICWWKGYIKGIIRREKGIEEQDSQTGTFTLKQIRAATDDFNPANKIGEGGFGPVYKGQLSDGTWIAVKQLSSKSRQGNREFLNEIGMISCVQHPNLVKLHGCCVEGDQLILVYEYMQNNSLASALSGSENRLKLDWPTRLRICIGIAKGLAFLHEESRLKIVHRDIKATNVLLDGNLNPKISDFGLAKLDDEGKTHISTRVAGTIGYMAPEYALWGYLTYKADVYSFGVVVLEVVSGKNNNDYMPSDNCVCLLDMACHLQRTENLMKLVDERLGSEVNPTEAENLMKVALLCTNAAPSLRPTMSEVVNMLEGRISIPDVIPEPSVFSEDLRFKAMRDIHQHKESHSLSTSRTDNSTGVPTLSSPSIFGNDINEISSEP 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2506g00023 1009 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Gabi2506g00023 1009 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 403 598 - -
Gabi2506g00023 1009 Gene3D Phosphorylase Kinase; domain 1 641 746 - -
Gabi2506g00023 1009 Gene3D Ribonuclease Inhibitor 272 406 IPR032675 -
Gabi2506g00023 1009 FunFam Putative LRR receptor-like serine/threonine-protein kinase 747 953 - -
Gabi2506g00023 1009 CDD STKc_IRAK 677 943 - -
Gabi2506g00023 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Gabi2506g00023 1009 Gene3D - 407 600 - -
Gabi2506g00023 1009 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Gabi2506g00023 1009 Pfam Malectin domain 405 593 IPR021720 -
Gabi2506g00023 1009 Pfam Protein tyrosine and serine/threonine kinase 675 941 IPR001245 GO:0004672|GO:0006468
Gabi2506g00023 1009 Gene3D Ribonuclease Inhibitor 43 196 IPR032675 -
Gabi2506g00023 1009 Gene3D Ribonuclease Inhibitor 197 271 IPR032675 -
Gabi2506g00023 1009 ProSiteProfiles Protein kinase domain profile. 671 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2506g00023 1009 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 14 977 - -
Gabi2506g00023 1009 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 265 386 - -
Gabi2506g00023 1009 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 641 746 - -
Gabi2506g00023 1009 MobiDBLite consensus disorder prediction 980 1009 - -
Gabi2506g00023 1009 SUPERFAMILY L domain-like 76 341 - -
Gabi2506g00023 1009 MobiDBLite consensus disorder prediction 972 1009 - -
Gabi2506g00023 1009 SUPERFAMILY Protein kinase-like (PK-like) 653 972 IPR011009 -
Gabi2506g00023 1009 SMART serkin_6 671 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2506g00023 1009 Gene3D Transferase(Phosphotransferase) domain 1 747 947 - -
Gabi2506g00023 1009 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2506g00023 Gabi-Chr2506 319191 337278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2506g00023 7 836 Receptor kinase-like Gene Family AT1G29750 61.178 0.0 1037
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi2506g00023 PK_Tyr_Ser-Thr 2.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2506g00023 - - mtr:11406167 1639.78