Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2506g00019 ATGGAAAACCATGATGAGGTAGCTATAAATGTAAACAAGGAGGTCTCCAACTCAATTGAAGGCTCAGGCACCTATATCTCTGTGCCTTTCTTGCAGAAGTTGTTAGCTGAGGTGGTGGGGACATATTTCTTAATATTTGCAGGCTGTGCTTCAGTGGTGGTGAACAAAAACAACAACAATATTGTTACACTTCCTGGGGTCGCAATTGTTTGGGGACTTGTTGTGATGGTTCTTGTTTACTCTGTTGGTCACATCTCTGGTGCCCATTTCAATCCTGCCGTTACTATTGCTTTTGCTATCACCAGGAGGTTTCCTTTGATTCAGGTACCATCTTATGTAACAGCTCAGCTCCTTGGAGCCACACTTGCAAGTGGTACTCTGAAACTAACATTCAGTGGCAAGCATGACCAGTTTTCAGGAACACTCCCAGTAGGATCTGATCTGCAAGCTTTTGTTATTGAATTCATAATCACATTTTTCCTTATGTTTGTCATATCCGGGGTTGCCACTGATAACAGAGCGATTGGTGAGTTGGCTGGGATTGCAATTGGGTCTACGATACTTCTGAATGTGATGATTTCAGGGCCAGTGACAGGAGCATCAATGAACCCAGTTAGAAGCCTAGGACCTGCTTTTGTGCACCATGAATACAGAGGAATATGGATATATTTAGTGGCACCGGTTCTGGGGGCAGTGGCAGGAGCATGTGTCTACAACCTCATTAGGTACACAGATAAACCACTGCGTGAGATAACCAAGAGTGCCTCCTTCCTCAAAGCAACAGGACGTGGTGGCTCCAGATAA 804 0.4465 MENHDEVAINVNKEVSNSIEGSGTYISVPFLQKLLAEVVGTYFLIFAGCASVVVNKNNNNIVTLPGVAIVWGLVVMVLVYSVGHISGAHFNPAVTIAFAITRRFPLIQVPSYVTAQLLGATLASGTLKLTFSGKHDQFSGTLPVGSDLQAFVIEFIITFFLMFVISGVATDNRAIGELAGIAIGSTILLNVMISGPVTGASMNPVRSLGPAFVHHEYRGIWIYLVAPVLGAVAGACVYNLIRYTDKPLREITKSASFLKATGRGGSR 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2506g00019 267 NCBIfam MIP family channel protein 36 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2506g00019 267 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2506g00019 267 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2506g00019 267 PRINTS Major intrinsic protein family signature 32 51 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2506g00019 267 PRINTS Major intrinsic protein family signature 71 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2506g00019 267 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2506g00019 267 PRINTS Major intrinsic protein family signature 221 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2506g00019 267 Gene3D Glycerol uptake facilitator protein. 2 253 IPR023271 -
Gabi2506g00019 267 Pfam Major intrinsic protein 27 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Gabi2506g00019 267 SUPERFAMILY Aquaporin-like 26 252 IPR023271 -
Gabi2506g00019 267 ProSitePatterns MIP family signature. 89 97 IPR022357 -
Gabi2506g00019 267 PANTHER AQUAPORIN NIP2-1 18 258 IPR034294 -
Gabi2506g00019 267 CDD MIP 32 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2506g00019 Gabi-Chr2506 259798 262542 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2506g00019 32 260 Major Intrinsic Protein MIP AT5G37810 62.882 2.40e-104 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2506g00019 K09874 - gmx:100813448 418.698