Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2506g00017 ATGGATGAAGCACAGGGAAATTCAAGTTCCCTGCCTCCTTTCCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCACGGATCCAATTGTTTCTTGGAGTGCCACTAACAAAAGTTTCGTTGTATTGAATCCCCCAGAATTTGCAAGGGATTTGTTGCCTAGGTTCTTTAAGCACAATAACTTCTCAAGTTTTATCAGGCAGCTGAACACATATGGATTTAGAAAAATCGACCCAGAACAATGGGAATTTGCCAACGATGATTTTGTTAGAGGACAACCACATCTTATGAAGAATATCCATAGGCGAAAGCCGGTTCATAGCCATTCCTTACAGAATCTCCAAGCACAAGTCCCACTAACGGAGTCAGAAAGGCAAAGTCTAAATGATGAAATTGAGAAGCTTAAACATGATAAAGAACGACTTGGTATGGAGTTACAGAGATATCAACGTGAGTGGCAATCATATGAGATACAAATAAATTTCTCAAAAGATCAGTTGGAGAAGTTGGAGCAGAAGCAACAAAAGATGGTCTCTTCTGTTTCTCAATTATTGCAGAAACCTGGAATTGCTGTTAATCTACTGCCACTGACAGAAACCATGGATAGAAAACGAAGGTTGCCAAGAAGTGTCTACTTTAATGATGAGTCTAGCATTGATGGTGCTATTGAAACTTCTCAAATGTTACCCAGAGAAAATGCAGAGAGTACCTCTGGTTTGACATTAAACATGGAGAGATTGGATCAGCTTGAGTCATCCCTAGTGTTTTGGGAGACTATTGCACACGATGTTGCTGACACCTTAGTTCACATTCATTCAAACATGGATTTTGAAGAATCTACAGCTTGTACTGATAGTCCATCTATATCTTGTGTGCAACTAGATGTTGAGCTTCGGCCTAAGTCATCTGGAATTGACATGAACTCTGAGCCAACTGCAGCTGCTGTTCCTGAGCCCGTTGCATCAAAAGAAAAACCTGTGGGAACCGCCACTGCAGCAACTGGTGTCAATGATGTATTCTGGGAACAATTCTTGACAGAGGATCCTGGTGCATCAGAAGCTCAAGAAGTGCTGTCAGAAAGAAAGGATATTGATGGCAGAAAGAATGAAGGAAAACCTAGTGACCTCGGTAAATTTTGGTGGAACATTCGGACTGCAAATAACCTTCCAGGACAGATGGGACATGTTGTTCAAGCTGAGAAAACTTAG 1209 0.4136 MDEAQGNSSSLPPFLAKTYEMVDDPSTDPIVSWSATNKSFVVLNPPEFARDLLPRFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANDDFVRGQPHLMKNIHRRKPVHSHSLQNLQAQVPLTESERQSLNDEIEKLKHDKERLGMELQRYQREWQSYEIQINFSKDQLEKLEQKQQKMVSSVSQLLQKPGIAVNLLPLTETMDRKRRLPRSVYFNDESSIDGAIETSQMLPRENAESTSGLTLNMERLDQLESSLVFWETIAHDVADTLVHIHSNMDFEESTACTDSPSISCVQLDVELRPKSSGIDMNSEPTAAAVPEPVASKEKPVGTATAATGVNDVFWEQFLTEDPGASEAQEVLSERKDIDGRKNEGKPSDLGKFWWNIRTANNLPGQMGHVVQAEKT 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2506g00017 402 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Gabi2506g00017 402 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2506g00017 402 FunFam Heat shock transcription factor 1 7 104 - -
Gabi2506g00017 402 MobiDBLite consensus disorder prediction 302 325 - -
Gabi2506g00017 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 6 230 IPR027725 -
Gabi2506g00017 402 MobiDBLite consensus disorder prediction 351 377 - -
Gabi2506g00017 402 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2506g00017 402 MobiDBLite consensus disorder prediction 354 374 - -
Gabi2506g00017 402 Coils Coil 111 187 - -
Gabi2506g00017 402 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2506g00017 402 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2506g00017 402 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2506g00017 402 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2506g00017 402 Gene3D - 6 104 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2506g00017 Gabi-Chr2506 236797 238966 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2506g00017 7 402 HSF AT4G18880 50.743 5.23e-123 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi2506g00017 HSF_DNA-bind 3.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2506g00017 K09419 - gmx:100798004 654.44