Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gabi2504g00031 | ATGTCTATCACAACTATGCCTGCGTTCAAATCCCTCACAATGGCAGAATCATGCCTACTCCCTCTACCCTCACTTTTCTACAGCAAAACCAAATACCCAATTTTCTCAAATACTTCTAAGCCCCTCAAGGTGCAATTGGCATGCTCCAATTCTCTCTCCCTCAGTAGGAGGAAAACCCACCATTCCTCTTTCCTCACATTTGTAGCCCAGACATCTGATTGGGCTCAACAAGAAGAAGAAGAAAAAGAAGAAGAAGAAACCGGATGGGAGAACCGCGACGAATCCACATGGGGTAATGAAGATGTTGACGAAACCGAAGGTGGAGAGGGCGAAGGAGAGAGTGATGAAGATGGGACTTTTGCTCAATCTGAAGAATTGAAGATATTCGTTGGGAATTTGCCTTTCGATGTTGACAGTGAGAAATTGGCCATGCTTTTTGAGACGGCTGGGACGGTTATGGTTGCTGAGGTCATTTATAATAGGGCCACTGACCGAAGTCGTGGGTTTGGATTCGTCACCATGAGTACAGTTGAAGAATTGGAGAAGGCTGTAGAGAAGTTCAGTGGCTATGATTTAGATGGAAGAGTGTTGACTGTCAATAAGGCTGCTCCAAAAGGAGCACAGCCTGAACGGCCACCCCGTGCCTTTGATAATGGTTTGAGAGTCTACGTTGGTAACTTGCCATGGGATGTTGACAATGTTCGCCTGGAGCAAATTTTCAGTGAACATGGTAAGGTTGAGAATGCACGGGTAGTCTATGACAGAGAGACTGGTCGATCACGTGGTTTTGGCTTTGTCACAATGTCCAGTGAGACTGATATTAATGATGCCATTGCTGCTCTTGATGGTCAGAGCTTGGACGGGAGGGCAATCAGAGTGAATGTTGCTGAGGAAAGGCCCAGGCGTAGCTCCTTTTGA | 918 | 0.4641 | MSITTMPAFKSLTMAESCLLPLPSLFYSKTKYPIFSNTSKPLKVQLACSNSLSLSRRKTHHSSFLTFVAQTSDWAQQEEEEKEEEETGWENRDESTWGNEDVDETEGGEGEGESDEDGTFAQSEELKIFVGNLPFDVDSEKLAMLFETAGTVMVAEVIYNRATDRSRGFGFVTMSTVEELEKAVEKFSGYDLDGRVLTVNKAAPKGAQPERPPRAFDNGLRVYVGNLPWDVDNVRLEQIFSEHGKVENARVVYDRETGRSRGFGFVTMSSETDINDAIAALDGQSLDGRAIRVNVAEERPRRSSF | 305 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gabi2504g00031 | 305 | MobiDBLite | consensus disorder prediction | 74 | 119 | - | - | |
| Gabi2504g00031 | 305 | FunFam | 31 kDa ribonucleoprotein, chloroplastic | 210 | 304 | - | - | |
| Gabi2504g00031 | 305 | SMART | rrm1_1 | 221 | 294 | IPR000504 | GO:0003723 | |
| Gabi2504g00031 | 305 | SMART | rrm1_1 | 127 | 200 | IPR000504 | GO:0003723 | |
| Gabi2504g00031 | 305 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 220 | 298 | IPR000504 | GO:0003723 | |
| Gabi2504g00031 | 305 | MobiDBLite | consensus disorder prediction | 99 | 119 | - | - | |
| Gabi2504g00031 | 305 | PANTHER | OS02G0815200 PROTEIN | 38 | 301 | - | - | |
| Gabi2504g00031 | 305 | SUPERFAMILY | RNA-binding domain, RBD | 212 | 303 | IPR035979 | GO:0003676 | |
| Gabi2504g00031 | 305 | CDD | RRM2_NsCP33_like | 221 | 296 | - | - | |
| Gabi2504g00031 | 305 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 128 | 197 | IPR000504 | GO:0003723 | |
| Gabi2504g00031 | 305 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 222 | 292 | IPR000504 | GO:0003723 | |
| Gabi2504g00031 | 305 | Gene3D | - | 68 | 208 | IPR012677 | - | |
| Gabi2504g00031 | 305 | Gene3D | - | 209 | 304 | IPR012677 | - | |
| Gabi2504g00031 | 305 | SUPERFAMILY | RNA-binding domain, RBD | 123 | 215 | IPR035979 | GO:0003676 | |
| Gabi2504g00031 | 305 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 126 | 204 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gabi2504g00031 | Gabi-Chr2504 | 338248 | 340876 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gabi2504g00031 | 115 | 302 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 33.838 | 4.57e-22 | 94.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gabi2504g00031 | - | - | gmx:100811487 | 419.083 |