LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2504g00023	ATGATGGAGATGGAACGCGTCTTCGAATTTCCTCACTCTCACATGGATCGACGCCCAAAAAAGAGAGCGCGGTTGGGCTGGGACGTTCCTGAGGTCCCAAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGGGACTATTTCAAGCTATGCTCCTTCAAGGGGTCACTCAGAACGTGCCACTAGTTCTCTATTTGTTAAGGGTGTTGCTCGAAATGGTTCTCCCCCTTTGCGCGATGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAGGATCCATAGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGGATAAAGAAGTATCGTGAAGCAGCCATGATAGAAATTGAGGTGTTGCAACAGCTTGGGAAACATGATAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATTTATGCATGATTTGCGTATGATCCATACTGACCTGAAGCCTGAAAATATACTTTTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGGGTTCATCTAGATCACCCAGTTCCTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATTAAGGTTATTGATTTTGGCAGCACCACCTATGAGCGAGAAGATCAGAATTATATTGTATCAACACGTCATTATAGGGCACCTGAAGTTATCCTTGGACTTGGCTGGAGTTATCCATGTGATATATGGAGTGTAGGATGTATATTGGTTGAGTTATGCACGGGCGAAGCCTTGTTTCAGACTCACGAGAATCTAGAGCACCTGGCCATGATGGAGAGGGTACTTGGTCCATTACCACAGCACGTGCTGAAGAGAGTTGACCGACATGCCGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCAGTGGGTGCAACCTCTAGGGAAAGTATTAAAGCTGTAATGAAGCTTCCTAGACTACAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGTGATCTCATACATCTCTTGCAGGGGTTACTTAGATTTGACCCCTCTGAAAGACTTACAGCGAAGGAAGCTTTGAGGCATTCCTTTTTTATGAGAGATCTCCTTCGGAGATGA	1296	0.4383	MMEMERVFEFPHSHMDRRPKKRARLGWDVPEVPKAQVGLFCGQEVGTISSYAPSRGHSERATSSLFVKGVARNGSPPLRDDDKDGHYMFALGENLTSRYRIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKGSSRSPSSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHVLKRVDRHAEKYVRRGRLDWPVGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRFDPSERLTAKEALRHSFFMRDLLRR	431

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Gabi2504g00023	431	FunFam	Serine/threonine-protein kinase AFC2	86	179	-	-
Gabi2504g00023	431	PANTHER	SERINE/THREONINE-PROTEIN KINASE DOA-RELATED	2	426	-	-
Gabi2504g00023	431	Gene3D	Transferase(Phosphotransferase) domain 1	153	424	-	-
Gabi2504g00023	431	FunFam	Serine/threonine-protein kinase AFC2	175	424	-	-
Gabi2504g00023	431	SMART	serkin_6	99	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gabi2504g00023	431	Gene3D	Phosphorylase Kinase; domain 1	86	179	-	-
Gabi2504g00023	431	ProSiteProfiles	Protein kinase domain profile.	99	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gabi2504g00023	431	Pfam	Protein kinase domain	99	424	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Gabi2504g00023	431	CDD	PKc_CLK	86	424	-	-
Gabi2504g00023	431	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	220	232	IPR008271	GO:0004672\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2504g00023	Gabi-Chr2504	249046	253248	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2504g00023	97	424	MAP Kinase Gene Family	AT5G19010	30.233	1.70e-25	107

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CLK	Gabi2504g00023		Pkinase	3.6e-50	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2504g00023	K08287		-	gmx:100804452	845.114

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