Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2504g00023 ATGATGGAGATGGAACGCGTCTTCGAATTTCCTCACTCTCACATGGATCGACGCCCAAAAAAGAGAGCGCGGTTGGGCTGGGACGTTCCTGAGGTCCCAAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGGGACTATTTCAAGCTATGCTCCTTCAAGGGGTCACTCAGAACGTGCCACTAGTTCTCTATTTGTTAAGGGTGTTGCTCGAAATGGTTCTCCCCCTTTGCGCGATGATGACAAAGATGGGCATTACATGTTTGCGCTTGGAGAAAATTTAACTTCTCGCTATAGGATCCATAGCAAAATGGGCGAAGGAACTTTTGGGCAGGTCTTGGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGGATAAAGAAGTATCGTGAAGCAGCCATGATAGAAATTGAGGTGTTGCAACAGCTTGGGAAACATGATAAAGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATCTGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGATCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATAGCATTTATGCATGATTTGCGTATGATCCATACTGACCTGAAGCCTGAAAATATACTTTTAGTTTCACCAGAGTATGTCAAAGTTCCTGACTACAAGGGTTCATCTAGATCACCCAGTTCCTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATTAAGGTTATTGATTTTGGCAGCACCACCTATGAGCGAGAAGATCAGAATTATATTGTATCAACACGTCATTATAGGGCACCTGAAGTTATCCTTGGACTTGGCTGGAGTTATCCATGTGATATATGGAGTGTAGGATGTATATTGGTTGAGTTATGCACGGGCGAAGCCTTGTTTCAGACTCACGAGAATCTAGAGCACCTGGCCATGATGGAGAGGGTACTTGGTCCATTACCACAGCACGTGCTGAAGAGAGTTGACCGACATGCCGAGAAGTATGTTAGAAGGGGTAGATTAGACTGGCCAGTGGGTGCAACCTCTAGGGAAAGTATTAAAGCTGTAATGAAGCTTCCTAGACTACAGAACCTTATAATGCAGCATGTTGATCATTCAGCTGGTGATCTCATACATCTCTTGCAGGGGTTACTTAGATTTGACCCCTCTGAAAGACTTACAGCGAAGGAAGCTTTGAGGCATTCCTTTTTTATGAGAGATCTCCTTCGGAGATGA 1296 0.4383 MMEMERVFEFPHSHMDRRPKKRARLGWDVPEVPKAQVGLFCGQEVGTISSYAPSRGHSERATSSLFVKGVARNGSPPLRDDDKDGHYMFALGENLTSRYRIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEVLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKGSSRSPSSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHVLKRVDRHAEKYVRRGRLDWPVGATSRESIKAVMKLPRLQNLIMQHVDHSAGDLIHLLQGLLRFDPSERLTAKEALRHSFFMRDLLRR 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2504g00023 431 FunFam Serine/threonine-protein kinase AFC2 86 179 - -
Gabi2504g00023 431 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 2 426 - -
Gabi2504g00023 431 Gene3D Transferase(Phosphotransferase) domain 1 153 424 - -
Gabi2504g00023 431 FunFam Serine/threonine-protein kinase AFC2 175 424 - -
Gabi2504g00023 431 SMART serkin_6 99 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2504g00023 431 Gene3D Phosphorylase Kinase; domain 1 86 179 - -
Gabi2504g00023 431 ProSiteProfiles Protein kinase domain profile. 99 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2504g00023 431 Pfam Protein kinase domain 99 424 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2504g00023 431 CDD PKc_CLK 86 424 - -
Gabi2504g00023 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Gabi2504g00023 431 SUPERFAMILY Protein kinase-like (PK-like) 86 427 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2504g00023 Gabi-Chr2504 249046 253248 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2504g00023 97 424 MAP Kinase Gene Family AT5G19010 30.233 1.70e-25 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gabi2504g00023 Pkinase 3.6e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2504g00023 K08287 - gmx:100804452 845.114