Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2504g00006 ATGGGTAAGTTAGAGTTCCTGTTTCTTCTCCAACTCTTTCTCTTTGTCACTCCCATGTTTTCCTTGGAATTTCTGTTTAATTCCTTCACCGGAATCACGAACCTGACTCTCATCAACGATGCCCGCGTCGACGCTTCCGTCATACGCATGACCAACGACTCCAACCAATACTCTTATGGGCGAGGTTTCTACCCAACACAAATCTCCATGAAACCCACCTCGAATTCCTCAACCATTTCTTCATTCTCCACTTCCTTTGTCTTCTCCATCTTGCCACAGATCGCTACCAGCCCAGGGTTCGGCCTCGCCTTCGTGCTCTGCAACACAACCTCCCCTCCCGGCGCACTCGCCAGCCAGTACTTCGGCTTGTTCACCAACGCAACCTCTCCCTCCCAATTCCCTCTTCTCGCCGTCGAATTCGACACCGGCCAGAACCCAGAGTTCAACGACATCAACGACAACCACATCGGAATCGACTTCAACAACGTCGAATCGAAAAACGCAACTCCTGCTGGGTACTTCAATTCCAGTGGCGGCTTCGTATCTGTCCGCATGCGCAGTGGTGAAAACATTCGAGCTTGGATCGAATTCGATGGCATGAATTCGGAGATAAACGTTACAGTTGCGCCGATCGGTGTGTCACGCCCGTTAAGGCCTACACTTTCGTATAGAGATCCAGCCATGGCTAACTATGTCTCCTCTGATATGTACGTTGGGTTTTCAGCTTCGAAAACCAATTGGATCGAGGCACAGAGAGTTCTCGCATGGAGCTTCAGCGATTCAGGTGTTGCGAGAGAAATAAACACAACGAACTTCCCAGTGTTCAAGCCAGAATCATCATCTTCTTCGCTTTCTAGTGCTGCAGTTGCAGGAATCGCCATTGGTTGTGTTGTGTTTGTGTTAATGTGTGCTTCAGGGTTTTACCTCTGGTGGCGAAACAACAAAATGAAAGAGGAAGAAGAGGATGAGATCGAAGAGTGGGAACTTGAGTATTGGCCACATAGATTCTCCTACGAGGAATTGAACATGGCCACTGGGAATTTCGGAAAAGAAAAGCTCCTAGGTTCAGGAGGGTTCGGAAGAGTGTATAAAGGGACACTCTCAAACAAGACGCAAATTGCGGTGAAATGCGTCAACCACGATTCTAAACAAGGGTTAAGAGAATTCATGGCAGAGATTTCTAGCATGGGGAGGCTTCAGCACAAGAACTTGGTCCAATTGCGAGGTTGGTGCAGAAAAGGGAACGAGTTAATGCTTGTTTACGATTTTATGCCCAATGGAAGCCTCAACAAGTGGGTTTTCGACCAACCAGAGAAGCTTATGGGATGGGAACAACGCCGTAGAATCCTTGTCGACGTGGCAGAGGGACTTAACTATCTTCACCATGGTTGGGACCAGGTTGTGATTCACAGAGACATCAAGTCCAGTAACATCTTATTGGACTCCGACATGCGAGGAAGACTAGGAGACTTCGGTTTGGCCAAGCTTTACCAACACGGCGAAGTTCCCAACACGACACGTGTCGTGGGAACGTTGGGGTATTTGGCGCCGGAGCTGGCGACGGTTGCTTCGCCAACTTCGGCCAGTGATGTGTATAGTTTTGGGGTGGTGCTGTTGGAGGTTGCTTGCGGTCGACGGCCGATAGAGACGTCGCTGCCGGAGGAGGAGATGGTGCTCGTGGATTGGGTAAGGGACTTTTACGCGAAAGGGTGTGCTGTTGAGGCTGCCGATTCTAGGATTAAGGGTGAGTACGATGTGGGAGACATGGAAATGGTGTTGAAGCTTGGGTTGGCTTGTTGCCACCCTGATCCACTGAGGAGACCAACCATTAAGGAAGTTGTTGCCCTCCTCTTAGGGGAGGAGGTTGCGGAGCATCCGGGGAAAGTGTTGTCTGATTTGGCTCGCGGCGAAGATGAAGGTGGAGCCGGCGAATTTGATGAGGCGGCGCCTTTGCAAACCACCACTAGGGTTTGA 1974 0.502 MGKLEFLFLLQLFLFVTPMFSLEFLFNSFTGITNLTLINDARVDASVIRMTNDSNQYSYGRGFYPTQISMKPTSNSSTISSFSTSFVFSILPQIATSPGFGLAFVLCNTTSPPGALASQYFGLFTNATSPSQFPLLAVEFDTGQNPEFNDINDNHIGIDFNNVESKNATPAGYFNSSGGFVSVRMRSGENIRAWIEFDGMNSEINVTVAPIGVSRPLRPTLSYRDPAMANYVSSDMYVGFSASKTNWIEAQRVLAWSFSDSGVAREINTTNFPVFKPESSSSSLSSAAVAGIAIGCVVFVLMCASGFYLWWRNNKMKEEEEDEIEEWELEYWPHRFSYEELNMATGNFGKEKLLGSGGFGRVYKGTLSNKTQIAVKCVNHDSKQGLREFMAEISSMGRLQHKNLVQLRGWCRKGNELMLVYDFMPNGSLNKWVFDQPEKLMGWEQRRRILVDVAEGLNYLHHGWDQVVIHRDIKSSNILLDSDMRGRLGDFGLAKLYQHGEVPNTTRVVGTLGYLAPELATVASPTSASDVYSFGVVLLEVACGRRPIETSLPEEEMVLVDWVRDFYAKGCAVEAADSRIKGEYDVGDMEMVLKLGLACCHPDPLRRPTIKEVVALLLGEEVAEHPGKVLSDLARGEDEGGAGEFDEAAPLQTTTRV 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2504g00006 657 Pfam Protein kinase domain 350 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2504g00006 657 ProSiteProfiles Protein kinase domain profile. 348 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2504g00006 657 Gene3D Phosphorylase Kinase; domain 1 333 423 - -
Gabi2504g00006 657 ProSitePatterns Protein kinases ATP-binding region signature. 354 376 IPR017441 GO:0005524
Gabi2504g00006 657 MobiDBLite consensus disorder prediction 634 657 - -
Gabi2504g00006 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 468 480 IPR008271 GO:0004672|GO:0006468
Gabi2504g00006 657 CDD lectin_legume_LecRK_Arcelin_ConA 22 262 IPR001220 GO:0030246
Gabi2504g00006 657 CDD STKc_IRAK 354 617 - -
Gabi2504g00006 657 PANTHER - 39 620 - -
Gabi2504g00006 657 ProSitePatterns Legume lectins beta-chain signature. 136 142 IPR019825 -
Gabi2504g00006 657 FunFam L-type lectin-domain containing receptor kinase S.4 20 266 - -
Gabi2504g00006 657 Pfam Legume lectin domain 21 271 IPR001220 GO:0030246
Gabi2504g00006 657 SUPERFAMILY Concanavalin A-like lectins/glucanases 10 264 IPR013320 -
Gabi2504g00006 657 SUPERFAMILY Protein kinase-like (PK-like) 325 617 IPR011009 -
Gabi2504g00006 657 Gene3D - 20 276 - -
Gabi2504g00006 657 FunFam L-type lectin-domain containing receptor kinase S.1 333 423 - -
Gabi2504g00006 657 SMART serkin_6 348 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2504g00006 657 Gene3D Transferase(Phosphotransferase) domain 1 424 628 - -
Gabi2504g00006 657 FunFam L-type lectin-domain containing receptor kinase S.4 424 628 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2504g00006 Gabi-Chr2504 40442 42786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2504g00006 21 619 Receptor kinase-like Gene Family AT1G15530 68.647 0.0 822
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Gabi2504g00006 Pkinase 9.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2504g00006 - - gmx:100780660 1050.04