Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2504g00003 ATGCACCCTTACGACAACAGATACTCCGACGCCACTTCTTTTCGCGACCGTCGCAGTGACCTGGTGCCGCCGTCTTTTGGCGGCCGCGGCGGTCCGCGTCCTTACGGTGGTCCTTACGCCGTATCTGGACCCAATGGTTTCGGATCCGGACCCGTCGCCCCGGTTCCGCCCTTTGTGCCCCCTCGTGGAGGCTTTGACGTTGGACGAGGTGGAAGATTTGCCAATGGTCGTGGTGGTGGTGGTGGTGGTGGTGGAAGGGGTCGTGGCGGTGGAAGAGGCGGAACTCACGGTTTTAGGGGCTCCGGGAGAGGAGGTAATGGAGGCAGAAGTTCCGGGTTTGGAGGTAGACATGGTGGTAGATCTTCTAAGGATGACTTGGACAATATTGCACTCCCCAAGCAAGATTTTAGAAACTTGGTCCCTTTTGAGAAGAACTTCTACTTTGAGAGCCCTTCGATTAAGGCCATGACTGATCATGATGTTATGCAGTACCGTGCCAGTAGAGATATCACCGTGCAAGGGCATGATGTGCCGAAACCTATTCGGATGTTTAATGAGGCAAATTTTCCTGATTACTGCCTTGAGGTCTTTGCCAAATTGGGTTTTGTTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGGCATATCTGCTTCCTGCTTTAGTGCATGTCAAAGCACAACCTCGATTGGCACATGGTGAAGGTCCCATTGTCTTAATTTTAGCACCAACTAGAGAGTTAGCTGTTCAAATTCAAGAACAAGCTCTGAAATTTGGTTCACAGGCAAGTATTAGAAGTACATGCATCTATGGTGGTGCACCAAAGGGGCCTCAAATCCGTGACCTTAAAAGAGGTGTTGAGATTGTTATTGCTACACCTGGTCGTCTGATAGATATGTTGGAAGCTCAGCATACAGACCTGCAGAGAGTGACTTATCTTGTCTTGGATGAAGCTGATCGAATGTTGGACATGGGATTTGAACCTCAGATACGGAAAATTATAGGCCAGATTCGACCAGATAGGCAGACATTATATTGGAGTGCTACATGGCCGAGGGAAGTTGAAACTCTGGCAAGGCAGTTTCTGCGCAACCCATATAAGGTAATTATTGGGTCATCAGAACTGAAAGCAAATCAATCTATCAATCAAGTTGTTGAAATAGTTACAGACACGGAGAAATACAATAGATTGATCAGACTGCTGAAAGAAGAGATGGATGGGAGCCGAATTCTAATATTTATGGAGACAAAAAAGGGTTGTGACCAAGTTACTCGACAATTGAGAATGGATGGATGGCCAGCACTATCCATTCATGGTGATAAAAATCAGGCTGAAAGAGACTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAGTAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAAGACATAAAATGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATATACACAGAATTGGTCGAACTGGTCGTGCAGGTGCTAAAGGAACTGCATACACCTTTTTCACACATGCCAATGGCAAGTATGCTAGGGATCTGATCAAGATTTTACAAGATGCTGGTCAGGTTGTGGGTCCTTCATTGTCAGCATTGGCTCGGTCAGCTGGTTCGGGTCAATTTGGGTCTAAGGGAAGCTTTCGTTCTAGAGGACGAGGAGGCTATGGCAATCGGGGTCGGGGTTCAATATCAGGATCTAATACCATTCCTATAGGAGGTTTAAAGAGGCCTTGGCAGGGTATGTATTAG 1833 0.4719 MHPYDNRYSDATSFRDRRSDLVPPSFGGRGGPRPYGGPYAVSGPNGFGSGPVAPVPPFVPPRGGFDVGRGGRFANGRGGGGGGGGRGRGGGRGGTHGFRGSGRGGNGGRSSGFGGRHGGRSSKDDLDNIALPKQDFRNLVPFEKNFYFESPSIKAMTDHDVMQYRASRDITVQGHDVPKPIRMFNEANFPDYCLEVFAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVKAQPRLAHGEGPIVLILAPTRELAVQIQEQALKFGSQASIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTDLQRVTYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVIIGSSELKANQSINQVVEIVTDTEKYNRLIRLLKEEMDGSRILIFMETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPVMTATDVAARGLDVKDIKCVINYDFPSSLEDYIHRIGRTGRAGAKGTAYTFFTHANGKYARDLIKILQDAGQVVGPSLSALARSAGSGQFGSKGSFRSRGRGGYGNRGRGSISGSNTIPIGGLKRPWQGMY 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2504g00003 610 Gene3D - 393 561 IPR027417 -
Gabi2504g00003 610 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 161 561 - -
Gabi2504g00003 610 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 334 342 IPR000629 -
Gabi2504g00003 610 MobiDBLite consensus disorder prediction 69 127 - -
Gabi2504g00003 610 CDD SF2_C_DEAD 401 531 - -
Gabi2504g00003 610 Gene3D - 145 392 IPR027417 -
Gabi2504g00003 610 MobiDBLite consensus disorder prediction 1 17 - -
Gabi2504g00003 610 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 182 210 IPR014014 GO:0003724
Gabi2504g00003 610 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 561 IPR001650 -
Gabi2504g00003 610 SMART ultradead3 201 404 IPR014001 -
Gabi2504g00003 610 FunFam ATP-dependent RNA helicase RhlB 392 565 - -
Gabi2504g00003 610 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 213 388 IPR014001 -
Gabi2504g00003 610 Pfam Helicase conserved C-terminal domain 412 522 IPR001650 -
Gabi2504g00003 610 Pfam DEAD/DEAH box helicase 206 377 IPR011545 GO:0003676|GO:0005524
Gabi2504g00003 610 CDD DEADc_DDX5_DDX17 194 388 - -
Gabi2504g00003 610 MobiDBLite consensus disorder prediction 564 599 - -
Gabi2504g00003 610 SMART helicmild6 441 522 IPR001650 -
Gabi2504g00003 610 MobiDBLite consensus disorder prediction 1 57 - -
Gabi2504g00003 610 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 541 IPR027417 -
Gabi2504g00003 610 FunFam probable ATP-dependent RNA helicase DDX17 144 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2504g00003 Gabi-Chr2504 13129 19843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2504g00003 179 542 Eukaryotic Initiation Factors Gene Family AT3G19760 36.712 9.89e-69 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2504g00003 K12823 - gmx:100777610 857.44