Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2504g00001 ATGACGACGAGGTTCAAGAAGAACAGGAAGAAGAGAGGCCACGTCAGCGCCGGCCACGGTCGTATCGGAAAACACCGTAAGCACCCTGGAGGTCGTGGTAACGCCGGTGGCATGCACCACCACCGAATCCTGTTCGACAAATATCACCCCGGTTACTTCGGGAAGGTTGGAATGCGTTACTTCCACAAGCTCCGCAACAAGTTCTATTGCCCCATTGTCAACATCGACAAGCTGTGGTCTTTGGTTTTGGGCAAGGGGGTTTTGCCACAGAACCAGCCCCTCGTCGTTAAGGCCAAACTCGTTTCCAAGATTGCTGAGAAGAAGATCAAGGAGGCTGGAGGTGCCGTTGTCCTCACCGCTTGA 363 0.5399 MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLVLGKGVLPQNQPLVVKAKLVSKIAEKKIKEAGGAVVLTA 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2504g00001 120 PANTHER 60S RIBOSOMAL PROTEIN L27A 82 120 - -
Gabi2504g00001 120 SUPERFAMILY Ribosomal proteins L15p and L18e 6 119 IPR036227 -
Gabi2504g00001 120 MobiDBLite consensus disorder prediction 1 36 - -
Gabi2504g00001 120 FunFam - 58 82 - -
Gabi2504g00001 120 Gene3D - 83 120 - -
Gabi2504g00001 120 Gene3D - 58 82 - -
Gabi2504g00001 120 Hamap 50S ribosomal protein L15 [rplO]. 1 119 IPR030878 GO:0003735|GO:0006412|GO:0015934
Gabi2504g00001 120 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2504g00001 Gabi-Chr2504 9484 10130 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2504g00001 1 120 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 76.712 1.47e-74 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2504g00001 K02900 - gmx:100527293 238.424